Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_C10
         (821 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.64 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   2.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   6.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   6.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   6.0  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   7.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   7.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.64
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 39  SSLNRSQHDAALPSTTPRQERKSST 113
           +++N+ Q   +   TTP++ERK++T
Sbjct: 775 ANVNKEQSPNSTKETTPKKERKTAT 799


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 34  RARVSTDRSTTLLYRAQHPARNGSRLQTIPSP 129
           R +VS DR++ + YR  +PA     +Q+ PSP
Sbjct: 413 RPQVSPDRTSPMEYRLYNPA----LIQSQPSP 440


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 656 YPWWVTFLGTSC 691
           YPWW   LG  C
Sbjct: 524 YPWWSHVLGWLC 535


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 656 YPWWVTFLGTSC 691
           YPWW   LG  C
Sbjct: 577 YPWWSHVLGWLC 588


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 415 ALGRAAGGAKLPSAGLCLNASKAEASL 335
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 415 ALGRAAGGAKLPSAGLCLNASKAEASL 335
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 415 ALGRAAGGAKLPSAGLCLNASKAEASL 335
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 415 ALGRAAGGAKLPSAGLCLNASKAEASL 335
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 672 LFWAPLAKNSLY*RIDRPCFRSPY 743
           L+++PL+  SLY    +P  +S Y
Sbjct: 266 LYYSPLSSRSLYYVNTKPFMKSEY 289


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 389 RTTGRPAECMNQMSETAVPLVLSS 460
           +  G+  +C N MSE  V ++L +
Sbjct: 170 KENGKEFDCHNYMSELTVDILLET 193


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 38  LESQQIAARRCSTEHNTPPGT 100
           + S Q + +R STE   P GT
Sbjct: 532 IRSGQTSVQRASTEFGIPTGT 552


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,529
Number of Sequences: 438
Number of extensions: 4732
Number of successful extensions: 22
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)