Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_C06
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    29   0.62 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.62 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    28   1.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.3  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   5.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   5.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.6  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    26   7.6  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -1

Query: 339 RAPPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 241
           R+PPP     +RS+   L    D+TP+ +W  ++S W
Sbjct: 99  RSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -1

Query: 837 PPPPXXPXPHPXPPRHRXXKXLPPXXXRPPPKPXRA 730
           P PP  P   P P        LPP    PPP P  A
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPA 483



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/42 (28%), Positives = 14/42 (33%)
 Frame = -2

Query: 836 PPPPXPPXPTPXXPATGXXKXSPRXPXXPPRSRXGRXTXXPV 711
           PPPP P       P  G    +   P  PP  R       P+
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPL 353


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/33 (48%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = +2

Query: 740 GFGGGRXXX--GGRXLXXRWRGGXGWGXGXXGG 832
           GFGGGR     GGR      RGG G   G  GG
Sbjct: 27  GFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +2

Query: 740 GFGGGRXXXGGRXLXXRWRGGXGWGXGXXGGG 835
           G GG R   GGR      RGG   G G   GG
Sbjct: 39  GRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -1

Query: 831 PPXXPXPHPXPPRHRXXKXLPPXXXRPPPKP 739
           PP  P P P PP        PP    PPP P
Sbjct: 5   PPGNPPPPPPPPGFE-----PPSQPPPPPPP 30


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 354 VQXCRRAPPPPLRSLISNLSNTCDLTPLPEW 262
           VQ      P P+ S    ++N  +L PLPEW
Sbjct: 2   VQTAALHGPKPMDSSHIKVTNVKELKPLPEW 32


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -1

Query: 837 PPPPXXPXPHPXPPRHRXXKXLPPXXXRPPP 745
           PP P    P P PP        PP    PPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = -1

Query: 831 PPXXPXPHPXPPRHRXXKXLPPXXXRPPPKPXRA 730
           PP  P P       R     PP    PPP P  A
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASA 157


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +1

Query: 745 RGGXXGXRGEXFXXPVAGXXGVGXGGXGGG 834
           RGG  G RG        G  G   GG GGG
Sbjct: 144 RGGRGGSRGGFGGNSRGGFGGGSRGGFGGG 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,621,524
Number of Sequences: 5004
Number of extensions: 19167
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)