Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_C04
(884 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 45 1e-05
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 37 0.004
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 32 0.12
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.50
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.50
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 29 0.67
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 2.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.7
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 26 8.2
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 45.2 bits (102), Expect = 1e-05
Identities = 42/163 (25%), Positives = 46/163 (28%), Gaps = 9/163 (5%)
Frame = +2
Query: 410 PPPXPGXXXRXAVXXPXTGXXSCPXXXXXPPXRXCXXXXXXP--------TXXPPLPSXX 565
PPP P ++ P G + P PP R P PP P
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPP----PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPA 394
Query: 566 FRXXPHPX-PPXSRLXRTXXXALXTPPXPPPXTPPXXXXXXXXPLXFXPIPLXRPKXYXL 742
P PP RT + TPP PP PP L P P
Sbjct: 395 IPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGA-PAAPPLPPSA 453
Query: 743 XXXPPXPRLSPXNXPXPXRXPXXXPXXXPPPPXAPTLHXXSXP 871
PP P P P P P P P P AP P
Sbjct: 454 PIAPPLPAGMPAAPPLPPAAP-APPPAPAPAPAAPVASIAELP 495
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 36.7 bits (81), Expect = 0.004
Identities = 36/149 (24%), Positives = 43/149 (28%), Gaps = 3/149 (2%)
Frame = +2
Query: 413 PPXPGXXXRXAVXXPXTGXXSCPXXXXXPPX---RXCXXXXXXPTXXPPLPSXXFRXXPH 583
PP P V P P PP P+ PP+P P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPV 1171
Query: 584 PXPPXSRLXRTXXXALXTPPXPPPXTPPXXXXXXXXPLXFXPIPLXRPKXYXLXXXPPXP 763
P P S + A PP PPP P P+P +P + PP
Sbjct: 1172 PAPS-SGIPPVPKPAAGVPPVPPPSEAP-------------PVP--KPSV-GVPPVPPPS 1214
Query: 764 RLSPXNXPXPXRXPXXXPXXXPPPPXAPT 850
P P P P PP AP+
Sbjct: 1215 TAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Score = 29.1 bits (62), Expect = 0.88
Identities = 28/112 (25%), Positives = 36/112 (32%), Gaps = 6/112 (5%)
Frame = +2
Query: 533 PTXXPPLPSXXFRXXPHPXPPXSRLXRTXXXALXTPPXPPP--XTPPXXXXXXXXPLXFX 706
P +PS P P S + ++ PP P P PP P+
Sbjct: 1067 PAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPV--- 1123
Query: 707 PIP-LXRPKXYXLXXXPPXPRLSPXNXPXP---XRXPXXXPXXXPPPPXAPT 850
P P + P PP P+ S P P P P PP AP+
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPS 1175
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.9 bits (69), Expect = 0.12
Identities = 24/80 (30%), Positives = 26/80 (32%), Gaps = 5/80 (6%)
Frame = +2
Query: 647 PPPXTPPXXXXXXXXPLXFXPIPLXRPKXYXLXXXPPXPRL---SPXNXP-XPXRXPXXX 814
PP PP P PIP P P P SP + P P P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
Query: 815 PXXXPPP-PXAPTLHXXSXP 871
P PPP AP + S P
Sbjct: 199 PKVPPPPLSQAPVANTSSRP 218
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.50
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 767 LSPXNXPXPXRXPXXXPXXXPPPPXAP 847
L P N P P P P PPPP P
Sbjct: 4 LPPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.50
Identities = 15/54 (27%), Positives = 17/54 (31%)
Frame = +3
Query: 444 PXXXPXPXXSPALXXXPXLPPXPAXXXXXTPXXXPPSPPXXFGAXLTRXPRXHA 605
P P P +P + P PP P P PP P G P A
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQA 799
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Frame = +2
Query: 692 PLXFXPIPLXRPKXYXLXXXPPXPRLS-PXNXPXPXRXPXXXPXXXPPPPXA 844
P P P P + PP P + P P P P PPPP A
Sbjct: 737 PAVIVPTPAPAP----IPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 29.5 bits (63), Expect = 0.67
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -3
Query: 342 RAPPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 244
R+PPP +RS+ L D+TP+ +W ++S W
Sbjct: 99 RSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.5 bits (58), Expect = 2.7
Identities = 23/88 (26%), Positives = 24/88 (27%)
Frame = -3
Query: 735 YXLGRXRGMGXXXRGXXXXXXXXGGVXGGGXGGVXRAXXXVRXRRXXGGXG*GWXRXXXE 556
Y G G G G GG GG G R R G G
Sbjct: 3 YTPGSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSG 62
Query: 555 GRGGXXVGXXXXXXQXRXGGXXXXXGQE 472
GRGG G R G G+E
Sbjct: 63 GRGGAKGGAKVIIEPHRHAGVFIARGKE 90
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Frame = -2
Query: 559 GGEGGXXXGVXXXXXAGXGGRXG-XXXRAGXXSGXGXXXG 443
GG GG G G GGR G R G G G G
Sbjct: 30 GGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKG 69
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.7
Identities = 24/100 (24%), Positives = 28/100 (28%)
Frame = +2
Query: 554 PSXXFRXXPHPXPPXSRLXRTXXXALXTPPXPPPXTPPXXXXXXXXPLXFXPIPLXRPKX 733
P+ P PP + T + PP PPP P P
Sbjct: 161 PNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADA---------NEPDD 211
Query: 734 YXLXXXPPXPRLSPXNXPXPXRXPXXXPXXXPPPPXAPTL 853
Y P + P P P PPPP PTL
Sbjct: 212 YYSSGRAVSPEIPPTYTPKQA-----DPLPAPPPPPPPTL 246
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 333 PPPLRSLISNLSNTCDLTPLPEW 265
P P+ S ++N +L PLPEW
Sbjct: 10 PKPMDSSHIKVTNVKELKPLPEW 32
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,632,713
Number of Sequences: 5004
Number of extensions: 20005
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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