Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_C03
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0307 - 2312816-2313133,2313920-2313967,2314337-2314393,231... 31 1.3
04_04_0315 - 24331996-24332853 30 2.4
11_06_0342 - 22523610-22524332 29 3.1
11_03_0181 - 11301759-11301838,11302294-11303095 29 3.1
04_01_0123 - 1283197-1283292,1283330-1284439,1284790-1285177,128... 29 3.1
06_03_1345 + 29478768-29479922 29 4.1
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 29 5.4
06_03_0555 + 22080522-22080845,22081190-22081290,22081916-22082027 29 5.4
07_03_0506 - 18861787-18861917,18862017-18862201,18862542-188626... 28 7.2
02_04_0513 - 23569212-23569675,23569759-23569801,23569888-235700... 28 9.5
>12_01_0307 -
2312816-2313133,2313920-2313967,2314337-2314393,
2315749-2315822,2316116-2316285,2316415-2316509
Length = 253
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -3
Query: 374 GDQRGADDVTGQRPLRDRRGVARRTPSFENRDQAS 270
GD G ++V G+R R RRG RRT + E D+A+
Sbjct: 176 GDGEGRENVRGRRERRRRRGWGRRTAT-EEADKAA 209
>04_04_0315 - 24331996-24332853
Length = 285
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 557 DGSGLEGHHPARLPAQRGRVQRALRPEPLRPYH 459
DG G HHP + +Q G+ R P PL P H
Sbjct: 21 DGGG--AHHPRLISSQVGQPARPTSPSPLPPRH 51
>11_06_0342 - 22523610-22524332
Length = 240
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Frame = -3
Query: 383 RIGGDQRGADDVTGQRPLR-------DRRGVARRTPSFENRDQASAGPKPTRSG 243
R+GG RG ++G R R +RRG+A R +NR Q G + TR G
Sbjct: 29 RLGGQPRGEGLLSGLRRARYAVATLWERRGIAARVVDLKNRAQ-GVGERRTRYG 81
>11_03_0181 - 11301759-11301838,11302294-11303095
Length = 293
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 543 EAAPISTTW-SPVWVFTASSPTILLASSQVTPS 638
EA P W SPVW T S PT+LL++ QVT S
Sbjct: 228 EAFPHVKCWTSPVWSAT-SRPTVLLSTWQVTCS 259
>04_01_0123 -
1283197-1283292,1283330-1284439,1284790-1285177,
1285523-1287609
Length = 1226
Score = 29.5 bits (63), Expect = 3.1
Identities = 39/136 (28%), Positives = 53/136 (38%), Gaps = 4/136 (2%)
Frame = -1
Query: 517 QHNAAVYSAPYARNPFDHITDNEIDEYRRDVERKRRGNEYDTDLSES--EAISAAQMXXX 344
QH AV A NP+D + + D+ +R ER R E T+LS + EA +AA
Sbjct: 209 QHIRAV-QAILRENPYDPVLN---DDLKRWTERLR---ESVTNLSNAFEEAATAAHPEQP 261
Query: 343 XXXXXXXXXXSRDE--HRVLRIETKQAPVRSQPEVVLSDVDTTDFLNAERAHVDSTRGDH 170
R E R +R Q T D +N R HV S R D+
Sbjct: 262 PTGDANGEDPERRESPQRATPPPRGTGDLRDQINGRQEARRTRDNVNRSRRHVSSRRHDN 321
Query: 169 TVNGDHSDAHQSTFSH 122
GD S+ + +H
Sbjct: 322 GNRGDRSNEDRDQDNH 337
>06_03_1345 + 29478768-29479922
Length = 384
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -1
Query: 538 GIIQRGYQHNAAVYSAPYARNPFDHITD--NEIDEYRRDVERKRR 410
G+ + AA + AR PFDH+ E+ E D ER+RR
Sbjct: 38 GVAAASIRLRAARATGGDARQPFDHVPRGVEEVGEMEEDEERRRR 82
>12_02_0228 +
15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +3
Query: 549 APISTTWSPVWVFTASSPTILLAS 620
+P S+T SPV+ FT+++PTI AS
Sbjct: 898 SPFSSTSSPVFSFTSATPTIPNAS 921
>06_03_0555 + 22080522-22080845,22081190-22081290,22081916-22082027
Length = 178
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -3
Query: 560 ADGSGLEGHHPARLPAQRGRVQR 492
A GSG G +PARL R R+QR
Sbjct: 48 ARGSGYSGAYPARLRVARPRIQR 70
>07_03_0506 -
18861787-18861917,18862017-18862201,18862542-18862613,
18863163-18863234,18863596-18863667,18864371-18864518,
18864864-18865922,18866663-18866762
Length = 612
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 526 RGYQHNAAVYSAPYARNPFDHITDNEIDEYRRDVERKRRGNEYDT 392
R Q AA APYA++ D ++ ++ R E R GN+ T
Sbjct: 562 RRAQKLAAAREAPYAKSRTQFTRDMQMAKHHRPHESSRSGNDEST 606
>02_04_0513 -
23569212-23569675,23569759-23569801,23569888-23570000,
23570099-23570158,23570472-23570541,23570887-23570951,
23571548-23571685,23571764-23573015
Length = 734
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -1
Query: 742 VPKNTXPKXLRSFNNRSKENRRXDKISAGPQSHILEGVTWDEASKMVGEDAV 587
VP N P S R K+ +R + + G + L EAS ++ EDA+
Sbjct: 110 VPVNRAPALSSSAAPRGKKGQRGNHVVRGAKGRFLPTKPRPEASTVLTEDAI 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,000,786
Number of Sequences: 37544
Number of extensions: 317380
Number of successful extensions: 1101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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