Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_C02
(785 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L24559-1|AAA16459.1| 598|Homo sapiens DNA polymerase alpha prot... 34 0.51
CR456737-1|CAG33018.1| 598|Homo sapiens POLA2 protein. 34 0.51
BC002990-1|AAH02990.1| 598|Homo sapiens polymerase (DNA directe... 34 0.51
BC001347-1|AAH01347.1| 598|Homo sapiens polymerase (DNA directe... 34 0.51
L37368-1|AAA92859.1| 305|Homo sapiens RNA-binding protein protein. 31 3.6
BC108316-1|AAI08317.1| 305|Homo sapiens RNA binding protein S1,... 31 3.6
BC001838-1|AAH01838.1| 305|Homo sapiens RNA binding protein S1,... 31 3.6
BC001659-1|AAH01659.1| 305|Homo sapiens RNA binding protein S1,... 31 3.6
AF274003-1|AAL56665.1| 282|Homo sapiens splicing-related factor... 31 3.6
Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein. 31 4.7
BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subuni... 31 4.7
AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D receptor-inte... 31 4.7
AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone recepto... 31 4.7
BC100287-1|AAI00288.1| 366|Homo sapiens AFF4 protein protein. 30 8.2
BC063007-1|AAH63007.1| 353|Homo sapiens AFF4 protein protein. 30 8.2
BC025700-1|AAH25700.1| 365|Homo sapiens AFF4 protein protein. 30 8.2
AF213987-1|AAM00184.2| 1163|Homo sapiens MCEF protein protein. 30 8.2
AF197927-1|AAF18981.1| 1163|Homo sapiens AF5q31 protein protein. 30 8.2
AB209547-1|BAD92784.1| 907|Homo sapiens ALL1 fused gene from 5q... 30 8.2
>L24559-1|AAA16459.1| 598|Homo sapiens DNA polymerase alpha
protein.
Length = 598
Score = 34.3 bits (75), Expect = 0.51
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -3
Query: 657 PQ*GNSLQNLHTPRHDVCKRSVRSRSPHPLEIPSGYS 547
P G+ + + TP + KRSV +RSPH L PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152
>CR456737-1|CAG33018.1| 598|Homo sapiens POLA2 protein.
Length = 598
Score = 34.3 bits (75), Expect = 0.51
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -3
Query: 657 PQ*GNSLQNLHTPRHDVCKRSVRSRSPHPLEIPSGYS 547
P G+ + + TP + KRSV +RSPH L PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152
>BC002990-1|AAH02990.1| 598|Homo sapiens polymerase (DNA directed),
alpha 2 (70kD subunit) protein.
Length = 598
Score = 34.3 bits (75), Expect = 0.51
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -3
Query: 657 PQ*GNSLQNLHTPRHDVCKRSVRSRSPHPLEIPSGYS 547
P G+ + + TP + KRSV +RSPH L PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152
>BC001347-1|AAH01347.1| 598|Homo sapiens polymerase (DNA directed),
alpha 2 (70kD subunit) protein.
Length = 598
Score = 34.3 bits (75), Expect = 0.51
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -3
Query: 657 PQ*GNSLQNLHTPRHDVCKRSVRSRSPHPLEIPSGYS 547
P G+ + + TP + KRSV +RSPH L PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152
>L37368-1|AAA92859.1| 305|Homo sapiens RNA-binding protein protein.
Length = 305
Score = 31.5 bits (68), Expect = 3.6
Identities = 31/88 (35%), Positives = 42/88 (47%)
Frame = -3
Query: 417 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 238
G T E S + R + TR R S+S ++R SS S +G+ S SSS+ + +
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104
Query: 237 TKGSTSELTHRHSPLSFSPDLLSGSRFR 154
GS+S T R S S S S SR R
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRR 130
>BC108316-1|AAI08317.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 31.5 bits (68), Expect = 3.6
Identities = 31/88 (35%), Positives = 42/88 (47%)
Frame = -3
Query: 417 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 238
G T E S + R + TR R S+S ++R SS S +G+ S SSS+ + +
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104
Query: 237 TKGSTSELTHRHSPLSFSPDLLSGSRFR 154
GS+S T R S S S S SR R
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRR 130
>BC001838-1|AAH01838.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 31.5 bits (68), Expect = 3.6
Identities = 31/88 (35%), Positives = 42/88 (47%)
Frame = -3
Query: 417 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 238
G T E S + R + TR R S+S ++R SS S +G+ S SSS+ + +
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104
Query: 237 TKGSTSELTHRHSPLSFSPDLLSGSRFR 154
GS+S T R S S S S SR R
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRR 130
>BC001659-1|AAH01659.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 31.5 bits (68), Expect = 3.6
Identities = 31/88 (35%), Positives = 42/88 (47%)
Frame = -3
Query: 417 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 238
G T E S + R + TR R S+S ++R SS S +G+ S SSS+ + +
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104
Query: 237 TKGSTSELTHRHSPLSFSPDLLSGSRFR 154
GS+S T R S S S S SR R
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRR 130
>AF274003-1|AAL56665.1| 282|Homo sapiens splicing-related factor
RNPS1 protein.
Length = 282
Score = 31.5 bits (68), Expect = 3.6
Identities = 31/88 (35%), Positives = 42/88 (47%)
Frame = -3
Query: 417 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 238
G T E S + R + TR R S+S ++R SS S +G+ S SSS+ + +
Sbjct: 24 GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 81
Query: 237 TKGSTSELTHRHSPLSFSPDLLSGSRFR 154
GS+S T R S S S S SR R
Sbjct: 82 RSGSSS--TSRSSSSSSSSGSPSPSRRR 107
>Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein.
Length = 1566
Score = 31.1 bits (67), Expect = 4.7
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -3
Query: 351 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 217
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+
Sbjct: 1060 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1103
>BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subunit 1
protein.
Length = 1581
Score = 31.1 bits (67), Expect = 4.7
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -3
Query: 351 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 217
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+
Sbjct: 1075 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1118
>AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D
receptor-interacting protein complex component DRIP205
protein.
Length = 1566
Score = 31.1 bits (67), Expect = 4.7
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -3
Query: 351 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 217
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+
Sbjct: 1060 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1103
>AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone
receptor-associated protein complex component TRAP220
protein.
Length = 1581
Score = 31.1 bits (67), Expect = 4.7
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -3
Query: 351 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 217
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+
Sbjct: 1075 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1118
>BC100287-1|AAI00288.1| 366|Homo sapiens AFF4 protein protein.
Length = 366
Score = 30.3 bits (65), Expect = 8.2
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = -3
Query: 372 TRPSRPNGKPS--TSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHS 199
+R S P GKP +S + H S + + + H + +SP + + + + +HS
Sbjct: 176 SRSSSP-GKPQAVSSLNSSHSRSHGNDHHSKEHQRSKSPRDPDANWDSPSRVPFSSGQHS 234
Query: 198 PLSFSPDLLSGSRFRXRW*IQRSTALARVSVSNSPVEPR 82
SF P L+S S +Q+ TA R +EP+
Sbjct: 235 TQSFPPSLMSKSNSM----LQKPTAYVRPMDGQESMEPK 269
>BC063007-1|AAH63007.1| 353|Homo sapiens AFF4 protein protein.
Length = 353
Score = 30.3 bits (65), Expect = 8.2
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = -3
Query: 372 TRPSRPNGKPS--TSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHS 199
+R S P GKP +S + H S + + + H + +SP + + + + +HS
Sbjct: 176 SRSSSP-GKPQAVSSLNSSHSRSHGNDHHSKEHQRSKSPRDPDANWDSPSRVPFSSGQHS 234
Query: 198 PLSFSPDLLSGSRFRXRW*IQRSTALARVSVSNSPVEPR 82
SF P L+S S +Q+ TA R +EP+
Sbjct: 235 TQSFPPSLMSKSNSM----LQKPTAYVRPMDGQESMEPK 269
>BC025700-1|AAH25700.1| 365|Homo sapiens AFF4 protein protein.
Length = 365
Score = 30.3 bits (65), Expect = 8.2
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = -3
Query: 372 TRPSRPNGKPS--TSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHS 199
+R S P GKP +S + H S + + + H + +SP + + + + +HS
Sbjct: 176 SRSSSP-GKPQAVSSLNSSHSRSHGNDHHSKEHQRSKSPRDPDANWDSPSRVPFSSGQHS 234
Query: 198 PLSFSPDLLSGSRFRXRW*IQRSTALARVSVSNSPVEPR 82
SF P L+S S +Q+ TA R +EP+
Sbjct: 235 TQSFPPSLMSKSNSM----LQKPTAYVRPMDGQESMEPK 269
>AF213987-1|AAM00184.2| 1163|Homo sapiens MCEF protein protein.
Length = 1163
Score = 30.3 bits (65), Expect = 8.2
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = -3
Query: 372 TRPSRPNGKPS--TSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHS 199
+R S P GKP +S + H S + + + H + +SP + + + + +HS
Sbjct: 176 SRSSSP-GKPQAVSSLNSSHSRSHGNDHHSKEHQRSKSPRDPDANWDSPSRVPFSSGQHS 234
Query: 198 PLSFSPDLLSGSRFRXRW*IQRSTALARVSVSNSPVEPR 82
SF P L+S S +Q+ TA R +EP+
Sbjct: 235 TQSFPPSLMSKSNSM----LQKPTAYVRPMDGQGSMEPK 269
>AF197927-1|AAF18981.1| 1163|Homo sapiens AF5q31 protein protein.
Length = 1163
Score = 30.3 bits (65), Expect = 8.2
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = -3
Query: 372 TRPSRPNGKPS--TSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHS 199
+R S P GKP +S + H S + + + H + +SP + + + + +HS
Sbjct: 176 SRSSSP-GKPQAVSSLNSSHSRSHGNDHHSKEHQRSKSPRDPDANWDSPSRVPFSSGQHS 234
Query: 198 PLSFSPDLLSGSRFRXRW*IQRSTALARVSVSNSPVEPR 82
SF P L+S S +Q+ TA R +EP+
Sbjct: 235 TQSFPPSLMSKSNSM----LQKPTAYVRPMDGQESMEPK 269
>AB209547-1|BAD92784.1| 907|Homo sapiens ALL1 fused gene from 5q31
variant protein.
Length = 907
Score = 30.3 bits (65), Expect = 8.2
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = -3
Query: 372 TRPSRPNGKPS--TSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHS 199
+R S P GKP +S + H S + + + H + +SP + + + + +HS
Sbjct: 183 SRSSSP-GKPQAVSSLNSSHSRSHGNDHHSKEHQRSKSPRDPDANWDSPSRVPFSSGQHS 241
Query: 198 PLSFSPDLLSGSRFRXRW*IQRSTALARVSVSNSPVEPR 82
SF P L+S S +Q+ TA R +EP+
Sbjct: 242 TQSFPPSLMSKSNSM----LQKPTAYVRPMDGQESMEPK 276
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,899,700
Number of Sequences: 237096
Number of extensions: 2424750
Number of successful extensions: 9570
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 9177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9549
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9590293096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -