Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_C02
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    34   0.10 
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    33   0.23 
AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ...    29   3.8  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
 Frame = -1

Query: 671 SKLSLRNK---VTLYKTCIRPVMTYASVVFAHAARTHLKSLQVIQSRFCR 531
           +K S  NK   + LYKT IRP + Y +VV +   ++  K+++ +Q+ F R
Sbjct: 210 NKYSTSNKKLMILLYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = -1

Query: 647 VTLYKTCIRPVMTYASVVFAHAARTHLKSLQVIQSRFCR 531
           + LYKT IRP + Y +VV +   ++  K+++ +Q+ F R
Sbjct: 191 ILLYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229


>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
            protein Y67D8A.1 protein.
          Length = 1020

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = -3

Query: 351  GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 172
            G+ S+  K RH G S S   +  HH H+   +    LAT  +    +   +P + +P  L
Sbjct: 944  GRASSEKKKRHVGGSSS--SSQHHHHHQQQQTPLLRLATPLTPEPSSGTVTPRAITPSPL 1001

Query: 171  SGS 163
            S S
Sbjct: 1002 SSS 1004


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,657,115
Number of Sequences: 27780
Number of extensions: 355003
Number of successful extensions: 954
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)