Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_C01
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   258   5e-71
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   258   5e-71
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.5  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  258 bits (631), Expect = 5e-71
 Identities = 126/183 (68%), Positives = 141/183 (77%)
 Frame = -1

Query: 737 GGXAGXTXXCXXVXPPXKLGRXXCXPPXSVKGDGQR*ILPVSGNCISKXFKSDGLIGLYR 558
           GG AG T  C     P    R         K  G+R    + GNC++K FK+DG+ GLYR
Sbjct: 122 GGAAGATSLCFVY--PLDFARTRLAADVG-KAGGEREFTGL-GNCLTKIFKADGITGLYR 177

Query: 557 GFGVSVQGIIXYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVR 378
           GFGVSVQGII YRA+YFGFYDTARGMLPDPK TP +ISW IAQ VTTVAGI+SYPFDTVR
Sbjct: 178 GFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVR 237

Query: 377 RRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAXFKGAXSNVLRGTGGAFVLVLYDEIK 198
           RRMMMQSGRAKS+ILYK+T+HCWATI KTEG +A FKGA SN+LRGTGGA VLVLYDEIK
Sbjct: 238 RRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIK 297

Query: 197 KVL 189
            +L
Sbjct: 298 NLL 300



 Score = 29.9 bits (64), Expect = 0.027
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = -1

Query: 440 AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAXFK 267
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  + ++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 266 GAXSNVLR 243
           G  +NV+R
Sbjct: 75  GNLANVIR 82


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  258 bits (631), Expect = 5e-71
 Identities = 126/183 (68%), Positives = 141/183 (77%)
 Frame = -1

Query: 737 GGXAGXTXXCXXVXPPXKLGRXXCXPPXSVKGDGQR*ILPVSGNCISKXFKSDGLIGLYR 558
           GG AG T  C     P    R         K  G+R    + GNC++K FK+DG+ GLYR
Sbjct: 122 GGAAGATSLCFVY--PLDFARTRLAADVG-KAGGEREFTGL-GNCLTKIFKADGITGLYR 177

Query: 557 GFGVSVQGIIXYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVR 378
           GFGVSVQGII YRA+YFGFYDTARGMLPDPK TP +ISW IAQ VTTVAGI+SYPFDTVR
Sbjct: 178 GFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVR 237

Query: 377 RRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAXFKGAXSNVLRGTGGAFVLVLYDEIK 198
           RRMMMQSGRAKS+ILYK+T+HCWATI KTEG +A FKGA SN+LRGTGGA VLVLYDEIK
Sbjct: 238 RRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIK 297

Query: 197 KVL 189
            +L
Sbjct: 298 NLL 300



 Score = 29.9 bits (64), Expect = 0.027
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = -1

Query: 440 AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAXFK 267
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  + ++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 266 GAXSNVLR 243
           G  +NV+R
Sbjct: 75  GNLANVIR 82


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 632  AGHLPLPTSAGXTGYVPTSXGGXXTH 709
            +G   +P   G    VP+  GG  TH
Sbjct: 1775 SGSQSMPRQNGRYSRVPSQGGGSGTH 1800


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 128 GSGCDTESHXNYGNNSYVRF 187
           GS  D+++  N+G  S VRF
Sbjct: 587 GSTTDSQTEDNFGPLSNVRF 606


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,646
Number of Sequences: 438
Number of extensions: 3317
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)