Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_B24
         (907 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0302 - 2021221-2023305                                           29   3.8  
08_01_0059 - 394001-394708                                             29   5.1  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    29   6.7  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           28   8.9  
02_05_0686 - 30900748-30902167,30903442-30904742                       28   8.9  

>02_01_0302 - 2021221-2023305
          Length = 694

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
 Frame = +1

Query: 430 RRXGPRFXPXCXTPXXAXGXXSSILRXAXPS-TVSWPPPSAXCVTXPXXXHXPXLDSXAP 606
           RR GP   P   +P  +    SS       S T S+P P +   T     H P   S + 
Sbjct: 409 RRRGPYPQPPSSSPTPSYPSPSSSYPAPPGSNTPSYPSPPSSATTPSS--HSPPGGSSST 466

Query: 607 TPSFPGXXG 633
           TPS+P   G
Sbjct: 467 TPSYPSPNG 475


>08_01_0059 - 394001-394708
          Length = 235

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +3

Query: 783 PPXPXXXXTPXXXXPPXXXXPXQXPPPP 866
           PP P     P    PP    P + PPPP
Sbjct: 11  PPPPATPPPPPRRAPPPPSPPIRPPPPP 38


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/41 (29%), Positives = 14/41 (34%)
 Frame = +3

Query: 741 PXXPSXXSTSXXXXPPXPXXXXTPXXXXPPXXXXPXQXPPP 863
           P  P     +    PP P    +P    PP    P   PPP
Sbjct: 93  PPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPPPPPPTQPPP 133


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 14/42 (33%), Positives = 15/42 (35%)
 Frame = +3

Query: 741 PXXPSXXSTSXXXXPPXPXXXXTPXXXXPPXXXXPXQXPPPP 866
           P  PS  +      PP P     P    PP    P   PPPP
Sbjct: 335 PPAPSPSAAGAGSGPPPPPPPAAPAAPRPP---GPGPGPPPP 373


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/42 (28%), Positives = 15/42 (35%)
 Frame = +3

Query: 741 PXXPSXXSTSXXXXPPXPXXXXTPXXXXPPXXXXPXQXPPPP 866
           P  P   + +    PP P     P     P    P + PPPP
Sbjct: 315 PPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPP 356


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,335,131
Number of Sequences: 37544
Number of extensions: 213691
Number of successful extensions: 1133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)