Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_B18
(857 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0281 + 26912419-26913099 33 0.22
11_07_0002 - 27171791-27172222 32 0.67
09_02_0279 + 6702517-6702948 32 0.67
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317... 31 1.6
11_01_0763 + 6402901-6403971,6404581-6404826 30 2.7
04_03_0849 + 20265511-20265984,20266452-20266617,20266694-202669... 29 3.6
09_01_0043 + 790859-790873,791410-791603,792521-792605,792719-79... 29 4.7
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 29 4.7
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365... 29 4.7
01_06_0752 + 31704071-31704787 29 4.7
11_08_0092 - 28307180-28307380,28307471-28307936,28308008-283081... 29 6.3
07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916... 28 8.3
05_06_0282 + 26915249-26915881 28 8.3
04_04_1019 + 30166514-30166585,30167207-30167841,30168505-301686... 28 8.3
>05_06_0281 + 26912419-26913099
Length = 226
Score = 33.5 bits (73), Expect = 0.22
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 236 QPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPGRD 409
+P G P + P P+ ++ +R+P GP W PG+P T+T L G D
Sbjct: 82 RPVGPTPPPPSHPVVPTPTQLAADDDGGLLRRPGGPTPPSPWHPGVP--TQTQLAGGD 137
>11_07_0002 - 27171791-27172222
Length = 143
Score = 31.9 bits (69), Expect = 0.67
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -2
Query: 427 RSTVYRVPTRQAGSGPAGYSGTPAAPSGRPDG----LPYRDGRRF 305
RS+ + +AGS PAG G+PA G P G P GR F
Sbjct: 55 RSSAASTSSARAGSTPAGVRGSPAGAGGSPGGGSGSTPVGGGRSF 99
>09_02_0279 + 6702517-6702948
Length = 143
Score = 31.9 bits (69), Expect = 0.67
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -2
Query: 427 RSTVYRVPTRQAGSGPAGYSGTPAAPSGRPDG----LPYRDGRRF 305
RS+ + +AGS PAG G+PA G P G P GR F
Sbjct: 55 RSSAASTSSARAGSTPAGVRGSPAGAGGSPGGGSGSTPVGGGRSF 99
>07_03_1573 +
27829967-27830338,27830821-27831510,27831594-27831781,
27832286-27832318,27832364-27832605,27833178-27833320,
27833649-27833825,27834104-27834256,27834639-27834694,
27834998-27835157,27835301-27835348
Length = 753
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +1
Query: 118 PKDFRTHPLNDSPXTLTPDVRSPPRSEPG*GRG---ATAVNTTTRRRGSPQGRPA 273
PK T N +P P R+PP PG G G + ++ RRRG P G A
Sbjct: 24 PKPKPTPIRNPTPPPPPPRRRTPPPPPPGSGPGPQRPSYLSVALRRRGPPAGSAA 78
>11_01_0763 + 6402901-6403971,6404581-6404826
Length = 438
Score = 29.9 bits (64), Expect = 2.7
Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Frame = +1
Query: 106 ADRGPKDFRTHPLNDSPXTLTP--DVRSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADG 279
A+ P + P + SP P D G GRGA R RG G DG
Sbjct: 21 AEADPSEETLDPASPSPDLAIPWPDPAGVDAGGGG-GRGAATHQGRRRWRGVGSGGGGDG 79
Query: 280 AFEANRRL*NVGRLGTAARRAAQ 348
A + RRL AA R A+
Sbjct: 80 AATSRRRLARQPAAAVAAARCAR 102
>04_03_0849 +
20265511-20265984,20266452-20266617,20266694-20266905,
20267154-20267647,20267732-20267780,20267922-20268251
Length = 574
Score = 29.5 bits (63), Expect = 3.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 317 VSVRQPVGPPRRCRWCPGIPRWTR 388
+ + + V PP R WCP RW R
Sbjct: 1 MEIARVVAPPLRLAWCPASRRWGR 24
>09_01_0043 +
790859-790873,791410-791603,792521-792605,792719-793075
Length = 216
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 397 QAGSGPAGYSGTPAAPSGRPDGLPYRDG 314
++GSG AG G+ A GR DG RDG
Sbjct: 118 RSGSGKAGCVGSRADQDGRLDGREVRDG 145
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 174 RPIPSEVRTRMR*GGYRGQHYNQTARLTPR 263
R PSE+R+R R G RG+ Y+Q +PR
Sbjct: 121 RKKPSEMRSRDRISGSRGRSYDQRYSRSPR 150
>07_03_0111 +
13535912-13535972,13536081-13536142,13536418-13536510,
13537577-13537649,13537876-13538265,13538337-13538404,
13539334-13539375,13540211-13540735,13540817-13540974,
13541078-13541636,13542438-13542500,13542579-13542680,
13542779-13543096,13543175-13543267,13543489-13543590,
13543678-13543782,13544190-13544323,13545097-13545280,
13545701-13545832,13546215-13546327,13546468-13546558,
13547138-13549339
Length = 1889
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +1
Query: 154 PXTLTPDVRSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEA 291
P D + P EP + +A T RR GSP PA A +A
Sbjct: 129 PPPSPKDAAADPAKEPSGSKAGSAAATGGRRTGSPPPSPAPVAKDA 174
>01_06_0752 + 31704071-31704787
Length = 238
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 549 RTGVFPPPAPGSTATDRC 602
R GV PPP P STA RC
Sbjct: 159 RAGVEPPPPPPSTAAARC 176
>11_08_0092 -
28307180-28307380,28307471-28307936,28308008-28308117,
28308206-28308493,28309024-28309059
Length = 366
Score = 28.7 bits (61), Expect = 6.3
Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Frame = +2
Query: 179 DPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRRCR 358
D + G+ PD QP A P+D QP PS + TS R+ G
Sbjct: 188 DAVHGEQPDGERDADEHRGQPHQRAAPRDVQPPSPSS--SPATTSPAHPRRAHGQVLLGS 245
Query: 359 WCPGIPRW-TRTSLPGRDAIHRRPV 430
P P W + LP R R P+
Sbjct: 246 H-PRGPHWRVQGHLPQRQGPRRVPI 269
>07_03_0603 -
19890664-19890823,19891104-19891329,19891498-19891636,
19891849-19891942,19892291-19892311,19892506-19892941,
19893133-19893280,19893369-19893476,19893543-19893659,
19893960-19894016,19894488-19894553,19895140-19895328,
19895410-19895523,19895684-19895766,19895857-19896322,
19896832-19897476
Length = 1022
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +1
Query: 139 PLNDSPXTLTPDVRSPP--RSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEA 291
P D TP+ R+PP +S + TTRRR P P GA A
Sbjct: 11 PFRDLSNLRTPNPRAPPNPKSSASKEEPLPSATPTTRRRRGPPPPPRPGAATA 63
>05_06_0282 + 26915249-26915881
Length = 210
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +3
Query: 480 RPHPLRSPLDLHGGXGRHLQGPGRTGVFPPPAPG 581
RPH +PL GG G + PGR PPP PG
Sbjct: 65 RPHGRVTPLADGGGGGVLRRPPGRGP--PPPGPG 96
>04_04_1019 +
30166514-30166585,30167207-30167841,30168505-30168645,
30169604-30170300
Length = 514
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 537 QGPGRTGVFPPPAPGSTATDRCGKG 611
Q P +FPPP S+ TD CG G
Sbjct: 62 QLPAEPMLFPPPPSLSSTTDGCGAG 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,899,686
Number of Sequences: 37544
Number of extensions: 502576
Number of successful extensions: 1994
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1990
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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