Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_B18
         (857 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.89 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   4.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   4.8  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   8.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   8.3  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 486 HPLRSPLDLHGGXGRHLQGPGRTG 557
           HP +  L +  G GRHL G  + G
Sbjct: 198 HPQQHGLGVQNGYGRHLPGHAQMG 221


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 403 TRQAGSGPAGYSGTPAAPSGRPDGLPY 323
           T +  S P G+      P G+ +G+PY
Sbjct: 588 TFKYSSQPYGFPERLLLPKGKKEGMPY 614


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 406  PTRQAGSGPAGYSG 365
            P+RQ GSG  G+ G
Sbjct: 1923 PSRQTGSGHGGHGG 1936


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 403 TRQAGSGPAGYSGTPAAPSGRPDGLPY 323
           T +  S P G+      P G+ +G+PY
Sbjct: 588 TFKYSSQPYGFPERLLLPKGKKEGMPY 614


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = -1

Query: 401 PAGWFWSSGVFRDTSGTV 348
           PAGW W    F    G V
Sbjct: 162 PAGWIWGDQGFLKKLGAV 179


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 329 QPVGPPRRCRWCP 367
           +PV PPRR   CP
Sbjct: 336 EPVEPPRRKNNCP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,510
Number of Sequences: 438
Number of extensions: 3972
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)