Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_B16
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 246 2e-66
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 123 3e-29
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 109 3e-25
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 103 4e-23
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 1e-20
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 75 9e-15
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 75 9e-15
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 69 1e-12
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 45 1e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.7
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 27 3.0
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 6.8
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 9.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 246 bits (603), Expect = 2e-66
Identities = 118/149 (79%), Positives = 126/149 (84%), Gaps = 1/149 (0%)
Frame = -1
Query: 732 EMAXXASSXSLEX-FTTSRRSVITIGNERFRCPEALFQPSXLGMEANGIHETTYNSIMKC 556
E+ A S SLE + VITIGNERFR PEALFQPS LG+E GIHE TYNSIMKC
Sbjct: 226 ELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKC 285
Query: 555 DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSI 376
DVDIRKDLY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSI
Sbjct: 286 DVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSI 345
Query: 375 LASLSTFQQMWISKQEYDEXGPSIVHRKC 289
LASLSTFQQMWISKQEYDE GP IV+RKC
Sbjct: 346 LASLSTFQQMWISKQEYDESGPGIVYRKC 374
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 123 bits (296), Expect = 3e-29
Identities = 56/126 (44%), Positives = 82/126 (65%)
Frame = -1
Query: 669 ITIGNERFRCPEALFQPSXLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYP 490
IT+G E F PE LF P +G EA+G+H + SI+ D+D+R LY+N VLSGG+T+
Sbjct: 253 ITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLR 312
Query: 489 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEXGP 310
G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY
Sbjct: 313 GFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEYKNDQN 372
Query: 309 SIVHRK 292
I R+
Sbjct: 373 VIFRRR 378
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 109 bits (263), Expect = 3e-25
Identities = 58/142 (40%), Positives = 87/142 (61%), Gaps = 12/142 (8%)
Frame = -1
Query: 702 LEXFTTSRRSVITIGNERFRCPEALFQPSXLGMEANGIHETTYNSIMKCDVDIRKDLYAN 523
+ +T VI +G+ER+ CPE LFQP +G E G+ E +++I DVDIRK LY
Sbjct: 237 MRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRA 296
Query: 522 TVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSI 376
VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++
Sbjct: 297 IVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAV 356
Query: 375 LAS-LSTFQQMWISKQEYDEXG 313
LA ++ MW+SK E++E G
Sbjct: 357 LADIMAQNDHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 103 bits (246), Expect = 4e-23
Identities = 58/146 (39%), Positives = 79/146 (54%), Gaps = 11/146 (7%)
Frame = -1
Query: 717 ASSXSLEXFTTSRRSVITIGNERFRCPEALFQPSXLGMEAN---------GIHETTYNSI 565
ASS + + F G ERFR E LF PS + G+HE Y SI
Sbjct: 273 ASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSI 332
Query: 564 MKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII-APPERKYSVW 391
+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S + + +VW
Sbjct: 333 LACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVW 392
Query: 390 IGGSILASLSTFQQMWISKQEYDEXG 313
GGSILASL FQ +W+SKQEYDE G
Sbjct: 393 FGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 95.1 bits (226), Expect = 1e-20
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -1
Query: 594 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 415
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 414 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDEXGP---SIVHRKC 289
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 75.4 bits (177), Expect = 9e-15
Identities = 41/129 (31%), Positives = 64/129 (49%)
Frame = -1
Query: 678 RSVITIGNERFRCPEALFQPSXLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTT 499
+ V+ + NERF PE LF PS + + GI E S+ +I+ L N V GG
Sbjct: 271 QQVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNC 330
Query: 498 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 319
+PG R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E
Sbjct: 331 KFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSE 389
Query: 318 XGPSIVHRK 292
G +I+ RK
Sbjct: 390 HGANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 75.4 bits (177), Expect = 9e-15
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 15/146 (10%)
Frame = -1
Query: 687 TSRRSVITIGNERFRCPEALFQPSXLGME-ANGIHETTYNSIMKCDVDIRKDLYANTVLS 511
T + I +G ERF PE F P + + E N + +D+RK LY N VLS
Sbjct: 274 TGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLS 333
Query: 510 GGTTMYPGIADRMQKEITALAPST--------------MKIKIIAPPERKYSVWIGGSIL 373
GG+T++ +R+Q+++ + + + +I+ ++ +VW GGS+L
Sbjct: 334 GGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLL 393
Query: 372 ASLSTFQQMWISKQEYDEXGPSIVHR 295
A F +K +Y+E G SI R
Sbjct: 394 AQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 68.5 bits (160), Expect = 1e-12
Identities = 31/118 (26%), Positives = 62/118 (52%)
Frame = -1
Query: 654 ERFRCPEALFQPSXLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 475
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 474 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEXGPSIV 301
+++E+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -1
Query: 540 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 370
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 369 SLSTFQQMWISKQEYDEXGPSIVHRK 292
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 393 WIGGSILASLSTFQQM---WISKQEYDEXGPSIVHRK 292
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 27.1 bits (57), Expect = 3.0
Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
Frame = -1
Query: 687 TSRRSVITIGNERFRCPEALFQPSXLG-MEANGIHETTYNSIMKCDVDIRKDLYANTVLS 511
+ + ++T+ NE + E L S + E+ + CD+D ++ + +
Sbjct: 131 SENQPLVTLPNENNQVIEPLSSQSCKSQLSTQNYSESDFGWNQLCDLD---PIFKSLAFT 187
Query: 510 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYS 397
T ++P AD I ++K A RKYS
Sbjct: 188 DDTNLFPAFADSEAALIMLKKREMTRVKHRAGRPRKYS 225
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 468 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 358
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -3
Query: 511 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 332
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 331 GV 326
V
Sbjct: 534 AV 535
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,847,937
Number of Sequences: 5004
Number of extensions: 58474
Number of successful extensions: 168
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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