Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_B09
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 164 1e-41
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 163 2e-41
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 40 5e-04
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 30 0.43
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 30 0.43
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.3
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 28 1.8
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|... 27 4.0
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.4
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 164 bits (399), Expect = 1e-41
Identities = 84/144 (58%), Positives = 97/144 (67%)
Frame = -3
Query: 788 VXAIENPXDVFVXSSRPFGQRAVLKXCRAHPVLRXLRXVSXPGAFTNQIQAAFREXRLLI 609
+ IENP DV V SSRP+G RAVLK AH + PG FTN I +RE RL+I
Sbjct: 68 IATIENPADVCVISSRPYGHRAVLKFA-AHTGATAIAGRFTPGNFTNYITRTYREPRLII 126
Query: 608 VLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVL 429
V DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLAREVL
Sbjct: 127 VTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVL 186
Query: 428 RLRGVLPRDQRWDVVVDLFFYRXP 357
RLRG + R W+V+ DL+FYR P
Sbjct: 187 RLRGNISRTTAWEVMPDLYFYRDP 210
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 163 bits (397), Expect = 2e-41
Identities = 83/144 (57%), Positives = 97/144 (67%)
Frame = -3
Query: 788 VXAIENPXDVFVXSSRPFGQRAVLKXCRAHPVLRXLRXVSXPGAFTNQIQAAFREXRLLI 609
+ IENP DV V S+R +G RAVLK AH + PG FTN I +RE RL++
Sbjct: 67 IATIENPADVCVVSTRTYGHRAVLKFA-AHTGATAIAGRFTPGNFTNYITRTYREPRLIV 125
Query: 608 VLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVL 429
V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREVL
Sbjct: 126 VTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVL 185
Query: 428 RLRGVLPRDQRWDVVVDLFFYRXP 357
R+RG L R WDV+ DL+FYR P
Sbjct: 186 RVRGTLSRSAPWDVMPDLYFYRDP 209
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 39.5 bits (88), Expect = 5e-04
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = -3
Query: 617 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 438
L+++L+P ++ EA ++P I + +TD+ R V IP N S L+ LL+R
Sbjct: 182 LMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 29.9 bits (64), Expect = 0.43
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 327 ACCPSFSLSSGXTVEEQINHNIPALVTGKHTTKPQHFTCQQ 449
A P+ LSS T Q+ +N P T K K +HF QQ
Sbjct: 28 ASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQ 68
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 29.9 bits (64), Expect = 0.43
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 352 LQGSR*KNKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 471
L S+ N+S+T +++ SR ST RS STS AN H K E
Sbjct: 99 LTSSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 575 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 465
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 421 VVCFPVTSAGMLWLICSSTVXPEESEKD 338
V+ FP TS+G LI S + PEE KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598
>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 296 WFSWYHSLFLGLLSILFTFF 355
WF W+ F+ LL+ LFTFF
Sbjct: 64 WF-WHFYAFISLLNPLFTFF 82
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 467 IGLMWWLLAREVLRLRGVLPRDQRWD 390
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,240
Number of Sequences: 5004
Number of extensions: 53340
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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