Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_B07
         (863 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0610 - 25449085-25453284                                         33   0.22 
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    31   1.6  

>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 30/125 (24%), Positives = 36/125 (28%), Gaps = 1/125 (0%)
 Frame = +2

Query: 425  PPXXAXSPPRXXXXXXXTPSWLSSLXPXXAXLSXPXPXXXXXXPXXLXXXPXFXXXPPXP 604
            PP     PP         P  +  L P     S P P      P  +   P     PP P
Sbjct: 1114 PPTEKSLPP--PATVSLPPPTVKPLPPPVPVSSPPPPEKSPPPPAPVILPPPPIKSPPPP 1171

Query: 605  YXX-SPXXXXRXXXXPAXXXXETSPLXXXAPPXXXTLSIPQPITXXXLPRXXAXTSEPXX 781
                SP    +    PA       P+    PP    +S P P+     P        P  
Sbjct: 1172 APVISPPPPVKSPPPPAPVILPPPPVKSPPPPAP-VISPPPPVKSPPPPAPVILPPPPVK 1230

Query: 782  SPXXP 796
            SP  P
Sbjct: 1231 SPPPP 1235



 Score = 31.1 bits (67), Expect = 1.2
 Identities = 26/102 (25%), Positives = 32/102 (31%), Gaps = 1/102 (0%)
 Frame = +2

Query: 425  PPXXAXSPPRXXXXXXXTPSWLSSLXPXXAXLSXPXPXXXXXXPXXLXXXPXFXXXPPXP 604
            PP    SPP         P  + S  P    +S P P      P  +   P     PP P
Sbjct: 1145 PPPPEKSPPPPAPVILPPPP-IKSPPPPAPVISPPPPVKSPPPPAPVILPPPPVKSPPPP 1203

Query: 605  Y-XXSPXXXXRXXXXPAXXXXETSPLXXXAPPXXXTLSIPQP 727
                SP    +    PA       P+    PP    +S P P
Sbjct: 1204 APVISPPPPVKSPPPPAPVILPPPPV-KSPPPPAPVISPPPP 1244



 Score = 30.3 bits (65), Expect = 2.1
 Identities = 28/125 (22%), Positives = 34/125 (27%), Gaps = 1/125 (0%)
 Frame = +2

Query: 425  PPXXAXSPPRXXXXXXXTPSWLSSLXPXXAXLSXPXPXXXXXXPXXL-XXXPXFXXXPPX 601
            PP    SPP          +   S  P     S P        P  +    P     PP 
Sbjct: 1080 PPHEPISPPETPEKSYPPSTPEESSPPSVPKASSPPTEKSLPPPATVSLPPPTVKPLPPP 1139

Query: 602  PYXXSPXXXXRXXXXPAXXXXETSPLXXXAPPXXXTLSIPQPITXXXLPRXXAXTSEPXX 781
                SP    +    PA       P+    PP    +S P P+     P        P  
Sbjct: 1140 VPVSSPPPPEKSPPPPAPVILPPPPI-KSPPPPAPVISPPPPVKSPPPPAPVILPPPPVK 1198

Query: 782  SPXXP 796
            SP  P
Sbjct: 1199 SPPPP 1203



 Score = 29.5 bits (63), Expect = 3.6
 Identities = 24/101 (23%), Positives = 30/101 (29%)
 Frame = +2

Query: 425  PPXXAXSPPRXXXXXXXTPSWLSSLXPXXAXLSXPXPXXXXXXPXXLXXXPXFXXXPPXP 604
            PP    SPP         P  + S  P    +S P P      P  +   P     PP P
Sbjct: 1177 PPPPVKSPPPPAPVILPPPP-VKSPPPPAPVISPPPPVKSPPPPAPVILPPPPVKSPPPP 1235

Query: 605  YXXSPXXXXRXXXXPAXXXXETSPLXXXAPPXXXTLSIPQP 727
                          PA     + P     PP    +S+P P
Sbjct: 1236 APVISPPPPEKSPPPAAPVILSPPAVKSLPP-PAPVSLPPP 1275


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 24/94 (25%), Positives = 24/94 (25%)
 Frame = +3

Query: 417 PRDPPXXPXXXQEXXXXXPXPPHGSPXXXXXXXXSPXXXXXWXXXXPXXXXXPLXSXXPP 596
           P  PP  P          P PP   P        SP          P     P  S  PP
Sbjct: 567 PPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPP------PPPPILPNRSVPPP 620

Query: 597 PXXTXTLPXXXXGXXXXPPPXXXRXPXXXXXLPP 698
           P     LP         PPP     P      PP
Sbjct: 621 PPPPPPLPNHSVLPPPPPPPPPPSLPNRLVPPPP 654


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,325,679
Number of Sequences: 37544
Number of extensions: 201996
Number of successful extensions: 944
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)