Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_B06
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    32   0.12 
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    31   0.16 
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    27   4.5  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   4.5  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
 Frame = +1

Query: 34  NITGGPEAFPASPGQVGEQRLSQEG--GDLLTTA----RAPPKETLQLKSNCFANESTTG 195
           +I G P+       QV +  L+ +   GDLL  +    +  P + +   S+C  +ES   
Sbjct: 250 SIIGAPQPVTVIRNQVKQTVLADDLVIGDLLYFSNLDLKTCPVDGILFSSSCLLDESMVT 309

Query: 196 SESRPTEKIRRETQRADAWVRLHVDLF 276
            ES P  K   E    D+W+    ++F
Sbjct: 310 GESVPARKFPLEDNSLDSWMIASCNIF 336


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -3

Query: 547 HDDLGLESIRKHMKL-VSERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTD 371
           H+   +E  +KH+ +  S+R+ + +M   NR+I +    +P  +   +    R  H+L D
Sbjct: 318 HEAEFIEKQKKHLSIEASDRFKENSMWEKNRMITSGVSKAPGLESDYSLMEERRVHLLVD 377

Query: 370 PSDPITLALDTFSS 329
              P  L    FSS
Sbjct: 378 ELRPHFLDGAEFSS 391


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 424 PDHAGASHRRRPRHVLTDPSDPITLALDTFSS 329
           P HA +SH+     V +DP+ P     DT  S
Sbjct: 430 PKHASSSHKSSIMSVNSDPTSPKVSKFDTSDS 461


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 345 NARVIGSDGSVRTCLGRRR 401
           N+R +GS GS  T LGRRR
Sbjct: 3   NSRSVGSTGSNNTPLGRRR 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,789
Number of Sequences: 5004
Number of extensions: 46850
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)