Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_B06
(858 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0257 + 28719980-28720220,28721412-28721455,28722521-287225... 31 1.2
07_03_0034 - 12663290-12663355,12663437-12663566,12663903-126639... 30 2.1
03_02_0759 + 10959028-10959135,10959238-10959807 30 2.1
11_05_0050 + 18665251-18665613,18667280-18667744,18668548-186690... 29 6.3
07_02_0020 - 11897013-11897168,11897521-11897637,11898141-118981... 29 6.3
12_02_0396 + 18577574-18578056,18578094-18578723 28 8.3
10_01_0002 - 34139-34234,34337-34345,34806-35048,35931-36003,361... 28 8.3
05_06_0241 - 26634632-26636263 28 8.3
03_06_0507 + 34404843-34404968,34405091-34405151,34405260-344052... 28 8.3
>05_07_0257 +
28719980-28720220,28721412-28721455,28722521-28722590,
28722693-28722816,28723420-28724060,28725100-28725364,
28725434-28725713,28726042-28726209,28726867-28727358,
28727432-28727689
Length = 860
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 91 RLSQEGGDLLTTARAPPKETLQLKSNCFANESTTGSESRPTEKI 222
R S+ GGD + + P K+ +L S ++ S + ES PTEKI
Sbjct: 113 RGSKTGGDSTGSGKGPTKKETELHSLPKSSVSDSVKESNPTEKI 156
>07_03_0034 -
12663290-12663355,12663437-12663566,12663903-12663990,
12664106-12664178,12666144-12666248,12667610-12667732,
12667821-12667897,12668877-12669006
Length = 263
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 137 GARAVVSKSPPSWLSLCSPTCPGEAGKASGPPVMFQ 30
G +A +S P W S SP PGEA V+FQ
Sbjct: 22 GEQAGISAVIPGWFSEISPMWPGEAHSLKVEKVLFQ 57
>03_02_0759 + 10959028-10959135,10959238-10959807
Length = 225
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -2
Query: 137 GARAVVSKSPPSWLSLCSPTCPG 69
G+ AV SPPS LS CSP PG
Sbjct: 163 GSTAVERVSPPSILSACSPAPPG 185
>11_05_0050 +
18665251-18665613,18667280-18667744,18668548-18669037,
18669115-18669143
Length = 448
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 442 ADYSPNPDHAGASHRRRPRHVLTDPSDPI 356
AD PNP A SH + HV + P P+
Sbjct: 132 ADICPNPQPAYMSHPKPNPHVFSSPCSPV 160
>07_02_0020 -
11897013-11897168,11897521-11897637,11898141-11898197,
11898278-11898370,11898452-11898571,11898774-11898890,
11899254-11899349,11899445-11899594,11899932-11900086,
11901047-11901257
Length = 423
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 152 KVSFGGARAVVSKSPPS-WLSLCSPTCPGEA 63
KV +GG R V P S WLS C P C E+
Sbjct: 34 KVGYGGRRHGVDSEPVSCWLS-CQPPCSDES 63
>12_02_0396 + 18577574-18578056,18578094-18578723
Length = 370
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = -3
Query: 589 LAVGAPWFVRNVDLHDDLGLESIRKHMKLVSERYFDKAMRHDNRLIVAAADYSPNPDH 416
L +G P F+ V + D+G+ SIR H+ E+ F+ +R + +V Y PNP +
Sbjct: 231 LILGRP-FLSTVGANIDVGMGSIRFHINRKEEK-FEFQLRTEQCSMV-RIKYGPNPQN 285
>10_01_0002 -
34139-34234,34337-34345,34806-35048,35931-36003,
36184-36265,36398-36580,36663-36702,36814-36886,
37022-37290
Length = 355
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 134 ARAVVSKSPPSWLSLCSPTCP 72
A+A +S SPPS+ C CP
Sbjct: 5 AKATISLSPPSYAGCCMAACP 25
>05_06_0241 - 26634632-26636263
Length = 543
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = -3
Query: 574 PWFVRNVDLHDDLGLESIRKHMKLVSERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRR 395
P + R+V LH + K + +R AMR+ I D + D AG + RR
Sbjct: 104 PRYHRSVQLHKTIAYNGDAKALVATIKRQERLAMRNMAASIGCFLDADDSHDRAGRARRR 163
Query: 394 RPR 386
R R
Sbjct: 164 RRR 166
>03_06_0507 +
34404843-34404968,34405091-34405151,34405260-34405296,
34405365-34405386,34405861-34405957,34406037-34406180,
34407034-34407173,34408205-34408255,34408347-34408429,
34408515-34408590,34408646-34408760,34409080-34409575,
34409682-34409895,34410000-34410070,34410527-34410695,
34410787-34410916,34411330-34411742,34411839-34412039
Length = 881
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 118 LTTARAPPKETLQLKSNCF-ANESTTGSESRPTEKIRRETQRADA 249
L T RAP KE LQ K N A ++ +E++ + E Q ADA
Sbjct: 98 LATHRAPLKERLQKKENAMQAKDADVTNEAKDADS-TNEAQDADA 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,467,136
Number of Sequences: 37544
Number of extensions: 380978
Number of successful extensions: 1108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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