Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_B06
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   3.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   3.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   4.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   4.8  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 347 CKSYWI*WIRKDVSRATTVTCSCVI 421
           CK ++   +RKD+S A     SC+I
Sbjct: 130 CKGFFKRTVRKDLSYACREEKSCII 154


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 347 CKSYWI*WIRKDVSRATTVTCSCVI 421
           CK ++   +RKD+S A     SC+I
Sbjct: 130 CKGFFKRTVRKDLSYACREEKSCII 154


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 200 SDPVVDSFAKQLLLSCKVSFGGA 132
           SDP+ D  A   L+ CK+S   A
Sbjct: 211 SDPIFDKKAMSDLVICKLSHSNA 233


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 200 SDPVVDSFAKQLLLSCKVSFGGA 132
           SDP+ D  A   L+ CK+S   A
Sbjct: 211 SDPIFDKKAMSDLVICKLSHSNA 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,567
Number of Sequences: 438
Number of extensions: 3953
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)