Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_B05
         (902 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   5.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   5.0  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   8.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   8.8  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 246 LVPEVPVKRRLLNPQPFRQFACRQTVYADLVS 341
           LV +      +LN  P R  AC ++V A  +S
Sbjct: 301 LVDDCGCNSTMLNENPARVMACMRSVDAKTIS 332


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 246 LVPEVPVKRRLLNPQPFRQFACRQTVYADLVS 341
           LV +      +LN  P R  AC ++V A  +S
Sbjct: 301 LVDDCGCNSTMLNENPARVMACMRSVDAKTIS 332


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 42  PSLRVPSFXCT 10
           P +R PSF CT
Sbjct: 113 PGMRAPSFRCT 123


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/39 (23%), Positives = 16/39 (41%)
 Frame = +1

Query: 613 SGGWIGPGVFYGGQNSVDGVSRRSDGSLNELCLYRPPTV 729
           SG      +  G  N     SR +  +   +  ++PPT+
Sbjct: 601 SGSGSAENLSSGSNNQTSSASRENTSNTTSMESFKPPTL 639


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 42  PSLRVPSFXCT 10
           P +R PSF CT
Sbjct: 113 PGMRAPSFRCT 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,286
Number of Sequences: 438
Number of extensions: 5754
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)