Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_B03
(810 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.048
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.048
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.063
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.063
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 1.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 5.5
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 33.1 bits (72), Expect = 0.048
Identities = 19/63 (30%), Positives = 21/63 (33%)
Frame = +1
Query: 544 PPXXPXPXXTTXEXGXXPXXPFPXPRSXPPXVQXLPPXXXPXXXXLXXXAXXPPXPXPLP 723
PP P + P P P S PP Q P P A PP P +P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSA-VPPMPPKVP 202
Query: 724 XPP 732
PP
Sbjct: 203 PPP 205
Score = 26.6 bits (56), Expect = 4.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 763 PPPPAPSXXXXSPHPP 810
PPPPAP+ +P PP
Sbjct: 7 PPPPAPAPAAAAPAPP 22
Score = 26.2 bits (55), Expect = 5.5
Identities = 17/66 (25%), Positives = 20/66 (30%)
Frame = +1
Query: 604 PFPXPRSXPPXVQXLPPXXXPXXXXLXXXAXXPPXPXPLPXPPXXTXXXXXXXPPPPAPS 783
P P P + PP P + PP P P P PPP P+
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIP-----PPSPASAPPIPSKAPPIPSSLPPPAQPA 178
Query: 784 XXXXSP 801
SP
Sbjct: 179 APVKSP 184
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +1
Query: 691 AXXPPXPXPLPXPPXXTXXXXXXXPPPPAPSXXXXSPHPP 810
A PP P PP PP PA + S PP
Sbjct: 127 APAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPP 166
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.1 bits (72), Expect = 0.048
Identities = 20/68 (29%), Positives = 22/68 (32%)
Frame = +1
Query: 604 PFPXPRSXPPXVQXLPPXXXPXXXXLXXXAXXPPXPXPLPXPPXXTXXXXXXXPPPPAPS 783
P P P S PP P P + A PP P P P P PPA
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPA-APPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Query: 784 XXXXSPHP 807
+P P
Sbjct: 475 APPPAPAP 482
Score = 31.9 bits (69), Expect = 0.11
Identities = 24/87 (27%), Positives = 28/87 (32%), Gaps = 1/87 (1%)
Frame = +1
Query: 544 PPXXPXPXXTTXEXGXXPXXPFPXPRSXPPXVQXLPPXXXPXXXXLXXXA-XXPPXPXPL 720
PP +T P P P S PP P P L A PP P +
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGM 463
Query: 721 PXPPXXTXXXXXXXPPPPAPSXXXXSP 801
P P PPPAP+ +P
Sbjct: 464 PAAP---PLPPAAPAPPPAPAPAPAAP 487
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/57 (29%), Positives = 17/57 (29%), Gaps = 2/57 (3%)
Frame = +1
Query: 646 LPPXXXPXXXXLXXXAXXPPXPXPLPXPPXXTXXXXXXXPPPPAPSXXXXS--PHPP 810
LPP P PP P PP PPP S S P PP
Sbjct: 336 LPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/55 (27%), Positives = 18/55 (32%)
Frame = +1
Query: 610 PXPRSXPPXVQXLPPXXXPXXXXLXXXAXXPPXPXPLPXPPXXTXXXXXXXPPPP 774
P S PP +P P + P P P+P P T PP P
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVP----SLSAPAPPPIPPPSNGTVSSPPNSPPRP 274
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.7 bits (71), Expect = 0.063
Identities = 21/69 (30%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Frame = +1
Query: 604 PFPXPRSXPPXVQXLP-PXXXPXXXXLXXXAXXPPXPXPLPXPPXXTXXXXXXXPPPPAP 780
P P P + PP +P P P A P P P P + PP PAP
Sbjct: 1033 PIPVPSTAPP----VPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAP 1088
Query: 781 SXXXXSPHP 807
S P P
Sbjct: 1089 SGIPPVPKP 1097
Score = 31.5 bits (68), Expect = 0.15
Identities = 25/91 (27%), Positives = 29/91 (31%), Gaps = 2/91 (2%)
Frame = +1
Query: 544 PPXXPX--PXXTTXEXGXXPXXPFPXPRSXPPXVQXLPPXXXPXXXXLXXXAXXPPXPXP 717
PP P P T+ P P S P V LP P + + PP P P
Sbjct: 991 PPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVP-LPSADAPP---IPVPSTAPPVPIP 1046
Query: 718 LPXPPXXTXXXXXXXPPPPAPSXXXXSPHPP 810
PP PPP P+ P P
Sbjct: 1047 TSTPPVPKSSSGAPSAPPPVPAPSSEIPSIP 1077
Score = 29.1 bits (62), Expect = 0.78
Identities = 22/91 (24%), Positives = 24/91 (26%), Gaps = 4/91 (4%)
Frame = +1
Query: 547 PXXPXPXXTTXEXGXXPXXPFPXPRSXPPXVQX----LPPXXXPXXXXLXXXAXXPPXPX 714
P P P P P P P V +PP P P
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPV 1133
Query: 715 PLPXPPXXTXXXXXXXPPPPAPSXXXXSPHP 807
P+P PP PAPS P P
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164
Score = 28.3 bits (60), Expect = 1.4
Identities = 21/78 (26%), Positives = 25/78 (32%), Gaps = 2/78 (2%)
Frame = +1
Query: 556 PXPXXTTXEXGXXPXXPFPXPRSXPPXVQXLPPXXXPXXXX--LXXXAXXPPXPXPLPXP 729
P P +T P P P+S PP P + + PP P P P
Sbjct: 1033 PIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIP 1092
Query: 730 PXXTXXXXXXXPPPPAPS 783
P PP P PS
Sbjct: 1093 P--VPKPSVAAPPVPKPS 1108
Score = 27.5 bits (58), Expect = 2.4
Identities = 22/74 (29%), Positives = 23/74 (31%), Gaps = 6/74 (8%)
Frame = +1
Query: 604 PFPXPRSXPPXVQX---LPPXXXPXXXXLXXX---AXXPPXPXPLPXPPXXTXXXXXXXP 765
P P P PP + PP P A PP P P PP P
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP--VPKPSVGVP 1208
Query: 766 PPPAPSXXXXSPHP 807
P P PS P P
Sbjct: 1209 PVPPPSTAPPVPTP 1222
Score = 27.1 bits (57), Expect = 3.2
Identities = 19/60 (31%), Positives = 21/60 (35%)
Frame = +1
Query: 604 PFPXPRSXPPXVQXLPPXXXPXXXXLXXXAXXPPXPXPLPXPPXXTXXXXXXXPPPPAPS 783
P P P + P V PP P PP P P PP T PP P P+
Sbjct: 1180 PVPKPAAGVPPVP--PPSEAPPVPK--PSVGVPPVPPPSTAPPVPT--PSAGLPPVPVPT 1233
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = +3
Query: 693 GXXPXPXPSPXPPXPDXXXXXLXPPPPXPLXXXXVXPPT 809
G P P PS PP P PP P P V P+
Sbjct: 1187 GVPPVPPPSEAPPVPKPSVG--VPPVPPPSTAPPVPTPS 1223
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.063
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +1
Query: 703 PXPXPLPXPPXXTXXXXXXXPPPPAPSXXXXSPHPP 810
P P P+P PP PPPP P P PP
Sbjct: 744 PAPAPIPVPP-PAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 30.7 bits (66), Expect = 0.26
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +3
Query: 702 PXPXPSPXPPXPDXXXXXLXPPPPXPLXXXXVXPP 806
P P P+P P P PPPP P PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 703 PXPXPLPXPPXXTXXXXXXXPPPPAPSXXXXSPHPP 810
P P P+P PP PPPP + P PP
Sbjct: 746 PAPIPVP-PPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/49 (28%), Positives = 16/49 (32%)
Frame = +1
Query: 628 PPXVQXLPPXXXPXXXXLXXXAXXPPXPXPLPXPPXXTXXXXXXXPPPP 774
PP + P P + A P P P PP PPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +3
Query: 702 PXPXPSPXPPXPDXXXXXLXPPPPXPLXXXXVXPP 806
P P P P PP P PPPP P PP
Sbjct: 744 PAPAPIPVPP-PAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 714 PSPXPPXPDXXXXXLXPPPPXP 779
P P PP P PPPP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +1
Query: 700 PPXPXPLPXPPXXTXXXXXXXPPPPAPSXXXXSPHPP 810
PP P P P T PPPAP P PP
Sbjct: 732 PPPPPPAVIVP--TPAPAPIPVPPPAPIMGGPPPPPP 766
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.7 bits (61), Expect = 1.0
Identities = 24/83 (28%), Positives = 24/83 (28%), Gaps = 3/83 (3%)
Frame = -2
Query: 779 GAGGGGXXXXXXXVXXGGXGRGXGXGGXXAXXXXXXXXGXXXGG---NXCTXGGXERGXG 609
G GG G GG G G GG G GG GG G G
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFG 248
Query: 608 NGXXGXXPXSXVVXXGXGXXGGP 540
G G G G GGP
Sbjct: 249 GGLGGFGGGPGGFGGGPGGHGGP 271
Score = 27.1 bits (57), Expect = 3.2
Identities = 20/72 (27%), Positives = 20/72 (27%)
Frame = -2
Query: 809 GGWGDXXXXEGAGGGGXXXXXXXVXXGGXGRGXGXGGXXAXXXXXXXXGXXXGGNXCTXG 630
G G G GG G G G G G GG GG G
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFG 255
Query: 629 GXERGXGNGXXG 594
G G G G G
Sbjct: 256 GGPGGFGGGPGG 267
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 702 PXPXPSPXPPXPDXXXXXLXPPPPXP 779
P P P PP P PPPP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +1
Query: 691 AXXPPXPXPLPXPPXXTXXXXXXXPPPP 774
A PP P P PP PPPP
Sbjct: 2 ASLPPGNPPPPPPPPGFEPPSQPPPPPP 29
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Frame = +1
Query: 700 PPXPXPLPXPPXXTXXXXXXX--PPPPAPSXXXXS-PHP 807
PP P +P PP PPPP P+ S P+P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 25.8 bits (54), Expect = 7.3
Identities = 19/79 (24%), Positives = 23/79 (29%), Gaps = 1/79 (1%)
Frame = +1
Query: 547 PXXPXPXXTTXEXGXXPXXPFPXPRSXPPXVQXLP-PXXXPXXXXLXXXAXXPPXPXPLP 723
P P P P P + PP V +P P P + P
Sbjct: 1460 PKAPGMVTNAPAPSSAPAPPAPVSQ-LPPAVPNVPVPSMIPSVAQQPPSSVAPATAPSST 1518
Query: 724 XPPXXTXXXXXXXPPPPAP 780
PP + P PPAP
Sbjct: 1519 LPPSQSSFAHVPSPAPPAP 1537
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,462,305
Number of Sequences: 5004
Number of extensions: 20046
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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