Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_B02
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27...    31   1.3  
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25...    31   1.3  
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646...    29   3.1  
03_01_0515 - 3864796-3865425                                           29   3.1  
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329...    29   3.1  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    29   4.1  
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542...    29   5.4  
01_02_0031 + 10364487-10365407                                         28   7.2  
01_01_1130 + 8959909-8960396,8960588-8960638,8960736-8960827,896...    28   7.2  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    28   9.5  

>12_01_0033 -
           272848-272943,274026-274169,274264-274375,274521-274702,
           274781-274912,275038-276330,279841-280545,280649-280695,
           280787-280865
          Length = 929

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 675 PPGXPXPXPPPXXXXXXXPPP 737
           PPG P P PPP       PPP
Sbjct: 620 PPGAPPPPPPPGKPGGPPPPP 640


>11_01_0035 -
           256087-256185,256287-256430,256521-256632,256777-256958,
           257038-257169,257297-258589,259133-259837,260465-260549,
           260604-260650,260810-260900,261838-262101,262195-262309,
           262455-262570,262713-262847,262969-263036,263292-263411
          Length = 1235

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 675 PPGXPXPXPPPXXXXXXXPPP 737
           PPG P P PPP       PPP
Sbjct: 925 PPGAPPPPPPPGKPGGPPPPP 945


>04_03_0660 +
           18463011-18463322,18463424-18463516,18464500-18464607,
           18464892-18465044,18465256-18465354,18465443-18465571,
           18465987-18466166,18466208-18466246,18466247-18466363,
           18466445-18466609
          Length = 464

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 642 PPSXXXXXXXXPPGXPXPXPPPXXXXXXXPPP 737
           PP         PP  P P PPP       PPP
Sbjct: 38  PPPPARHRAPSPPRPPPPPPPPTQPAPPPPPP 69


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 642 PPSXXXXXXXXPPGXPXPXPPPXXXXXXXPPP 737
           PP         PP  P P PPP       PPP
Sbjct: 72  PPPPPPSVTSSPPPPPLPPPPPPPAASPPPPP 103


>02_01_0458 +
           3291563-3291733,3292082-3292769,3292847-3293363,
           3293438-3293637,3294137-3294372,3294469-3295302
          Length = 881

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 642 PPSXXXXXXXXPPGXPXPXPPPXXXXXXXPPP 737
           PP         PP  P P PPP       PPP
Sbjct: 356 PPPPPPPPPPPPPPPPRPPPPPPPIKKGAPPP 387


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 642 PPSXXXXXXXXPPGXPXPXPPPXXXXXXXPPP 737
           PP         PP  P P PPP       PPP
Sbjct: 97  PPYGVNSSQPPPPPPPPPSPPPSAPPPPPPPP 128



 Score = 24.2 bits (50), Expect(2) = 4.7
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +3

Query: 642 PPSXXXXXXXXPPGXPXPXPPP 707
           PP         PP  P P PPP
Sbjct: 43  PPQGAPPPFLAPPPPPPPGPPP 64



 Score = 23.0 bits (47), Expect(2) = 4.7
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +3

Query: 687 PXPXPPPXXXXXXXPPP 737
           P P PPP       PPP
Sbjct: 92  PPPPPPPYGVNSSQPPP 108


>03_02_0071 +
           5425722-5427154,5427259-5427464,5428445-5428686,
           5428788-5429570
          Length = 887

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +3

Query: 645 PSXXXXXXXXPPGXPXPXPPPXXXXXXXPPP 737
           PS        PP  P P PPP       PPP
Sbjct: 345 PSNAPPPPPPPPPPPPPPPPPKLNTAPKPPP 375


>01_02_0031 + 10364487-10365407
          Length = 306

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 675 PPGXPXPXPPPXXXXXXXPPP 737
           PP  P P PPP       PPP
Sbjct: 175 PPALPAPPPPPAPMLPLAPPP 195


>01_01_1130 +
           8959909-8960396,8960588-8960638,8960736-8960827,
           8960964-8961054,8961877-8961937,8962172-8962216,
           8962318-8962391,8962565-8962637,8963288-8963345,
           8963398-8963468,8963801-8963837,8964040-8964128,
           8964207-8964263,8964366-8964449,8964529-8964627,
           8964765-8964869,8965145-8965216,8965308-8965497,
           8965810-8966207
          Length = 744

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 675 PPGXPXPXPPPXXXXXXXPPP 737
           PP  P P PPP       PPP
Sbjct: 79  PPSPPPPPPPPPTNGTLTPPP 99


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/52 (26%), Positives = 14/52 (26%)
 Frame = +3

Query: 582 PXAPXXXPXXXXXXXXXXXXPPSXXXXXXXXPPGXPXPXPPPXXXXXXXPPP 737
           P  P   P            PP         P   P P PPP       PPP
Sbjct: 569 PPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPPP 620



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/52 (26%), Positives = 14/52 (26%)
 Frame = +3

Query: 582 PXAPXXXPXXXXXXXXXXXXPPSXXXXXXXXPPGXPXPXPPPXXXXXXXPPP 737
           P  P   P            PP         PP  P P PP        PPP
Sbjct: 603 PPPPPPPPILPNRSVPPPPPPPPPLPNHSVLPPPPPPPPPPSLPNRLVPPPP 654


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,479,462
Number of Sequences: 37544
Number of extensions: 158590
Number of successful extensions: 2128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1646
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)