Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_B01
         (866 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.68 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   3.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 15/44 (34%), Positives = 15/44 (34%)
 Frame = +3

Query: 648 QXPXSXPPXXXPPXPLXSPXXXXXXXXPXPRXTPSXQTPPXXPP 779
           Q P S  P   P  P  SP        P P   P    PP  PP
Sbjct: 14  QQPSSGAPGPQPS-PHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +3

Query: 639 PPPQXPXSXPPXXXPPXPLXSP 704
           PPP  P   PP   P   + SP
Sbjct: 46  PPPGGPPGAPPSQNPSQMMISP 67



 Score = 21.8 bits (44), Expect = 8.4
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = +3

Query: 660 SXPPXXXPPXPLXSPXXXXXXXXPXPRXTPSXQTPPXXPP 779
           S  P    P P  SP              PS   PP  PP
Sbjct: 13  SQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 805  PPPPPTPP 828
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 19/90 (21%), Positives = 23/90 (25%)
 Frame = +1

Query: 490 PPXKXPPPPXTXXXXPPPSPXXLXPXPXPXPPXXSPLXXSXXSXXPXXIXLPLXPPXRXP 669
           P  + P P           P    P   P P    P         P        P  R P
Sbjct: 79  PQPRPPHPRLRREAESEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPP 138

Query: 670 PXXXRPDPSSXRAXXXXXXXPXPAXPPXPK 759
               R +P +          P P  PP P+
Sbjct: 139 HPRLRREPEAEPGNNRPVYIPQP-RPPHPR 167


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +1

Query: 730 PXPAXPPXPKPPXXPRLXXXXXSXXPPPPPTPP 828
           P  A P   K P          +  PPP  TPP
Sbjct: 369 PLSAIPEPSKNPAMGHWQMSCVACSPPPRQTPP 401


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.141    0.482 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,013
Number of Sequences: 438
Number of extensions: 6798
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)