Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_P22
(902 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 177 7e-45
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 174 7e-44
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.18
03_05_0366 - 23505755-23506441 31 1.3
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 30 2.2
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 2.9
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 30 2.9
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 29 5.1
06_01_0017 + 189346-189561,189614-189905,190024-190043 29 6.7
04_01_0588 + 7657510-7657992,7658397-7658843 29 6.7
02_04_0457 + 23093020-23093343,23093798-23093806 29 6.7
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 177 bits (432), Expect = 7e-45
Identities = 81/133 (60%), Positives = 93/133 (69%)
Frame = +3
Query: 183 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 362
VF+AP+RPD+V VH +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 31 VFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHR 90
Query: 363 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 542
+GQGAFGNMCRGGRMFAPTK WR+WH ARGH IE
Sbjct: 91 AGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIET 150
Query: 543 IPELPLVVADKVQ 581
+PELPLV++D +
Sbjct: 151 VPELPLVISDSAE 163
Score = 48.8 bits (111), Expect = 6e-06
Identities = 24/53 (45%), Positives = 34/53 (64%)
Frame = +2
Query: 566 SRQSPEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRISVRGP 724
S + I KT QA+ L+++ A++D K S +R GKGKMRNRR I+ +GP
Sbjct: 159 SDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGP 211
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 174 bits (424), Expect = 7e-44
Identities = 81/133 (60%), Positives = 91/133 (68%)
Frame = +3
Query: 183 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 362
V +APIRPD+V H +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 30 VLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHR 89
Query: 363 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 542
+GQGAFGNMCRGGRMFAPTK WRRWH ARGH IE
Sbjct: 90 AGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLARGHRIEG 149
Query: 543 IPELPLVVADKVQ 581
+PE PLVV+D ++
Sbjct: 150 VPEFPLVVSDSIE 162
Score = 48.8 bits (111), Expect = 6e-06
Identities = 23/47 (48%), Positives = 33/47 (70%)
Frame = +2
Query: 584 INKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRISVRGP 724
I KT Q++ L+++ A++D K S +RAGKGKMRNRR I+ +GP
Sbjct: 164 IEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKGP 210
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.18
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +3
Query: 294 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 404
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 1.3
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 180 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 356
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 357 HRSGQGA 377
+ + + A
Sbjct: 168 NDNDEEA 174
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 263 AVGLPRVLGHRNVNIIDQVRTDGRLEHETGGAWLHPAPSHSSLNTPTLKV 114
A P+++ ++ DQ G LE G HPAP + SL +P LKV
Sbjct: 47 ACNQPKLILQLESHLKDQQVVRGALEKALGPDPDHPAPVNLSLESPMLKV 96
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 399 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 292
HH + H + YE+ + H + RQ QY QH
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQH 185
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = -3
Query: 372 PDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 271
P + +HHHGH + Q H G PP
Sbjct: 33 PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -3
Query: 369 DRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 271
D +HHH H G H Q QH PP
Sbjct: 32 DPQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPP 64
>02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 29.1 bits (62), Expect = 5.1
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 548 RASLG-CSRQSPEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRISVRGP 724
RA++G C R S +N + ++ + L ++S+ LK + GKG N S R P
Sbjct: 1509 RAAIGLCQRNSQRLNPEESQSLWFQLLDSFSEPLKKLYGSKDVNGKGVRSNGSETSNRQP 1568
Query: 725 S*SHKDQG 748
KD+G
Sbjct: 1569 ----KDKG 1572
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -1
Query: 536 NNVSSSLNERWDAGSSNGCRQGR--SPLSEVDATVPTP 429
N+ +S L+ +WDAGS + SPLS V A P
Sbjct: 103 NDSTSKLSFKWDAGSCSSASSSAMYSPLSAVSAPAKAP 140
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +3
Query: 216 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 386
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 387 MCRGGRMFAPTKPWRRW 437
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +3
Query: 279 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 383
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,924,355
Number of Sequences: 37544
Number of extensions: 547622
Number of successful extensions: 1928
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1919
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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