Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_P22
         (902 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   162   3e-40
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    29   6.0  
U28729-6|AAA68292.1|  549|Caenorhabditis elegans Phosphodiestera...    29   6.0  
U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiestera...    29   6.0  
U28729-4|AAN60496.1|  599|Caenorhabditis elegans Phosphodiestera...    29   6.0  
U28729-3|AAO38608.1|  612|Caenorhabditis elegans Phosphodiestera...    29   6.0  
U28729-2|AAK77625.1|  626|Caenorhabditis elegans Phosphodiestera...    29   6.0  
U28729-1|ABB88209.1|  673|Caenorhabditis elegans Phosphodiestera...    29   6.0  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   6.0  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  162 bits (394), Expect = 3e-40
 Identities = 76/133 (57%), Positives = 92/133 (69%)
 Frame = +3

Query: 183 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 362
           VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q SAESWGTGRAVARIPRVRGGGTHR
Sbjct: 26  VFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHR 85

Query: 363 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 542
           SGQGAFGNMCRGG MFAP K +RRWH                         QARGH+I++
Sbjct: 86  SGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQ 145

Query: 543 IPELPLVVADKVQ 581
           + E+PLVV+DKV+
Sbjct: 146 VAEVPLVVSDKVE 158



 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 28/45 (62%), Positives = 34/45 (75%)
 Frame = +2

Query: 590 KTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRISVRGP 724
           KTK+AV+FLRR   W+DI KVY S+R RAGKGK+RNR+     GP
Sbjct: 162 KTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGP 206


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = +3

Query: 243 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 413
           N R    V K   H+    SW T     +  R  GGG  R   SG    G   RGGR   
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196

Query: 414 PTKP 425
             KP
Sbjct: 197 APKP 200


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
           protein C29A12.4 protein.
          Length = 1560

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 569 GYNQGKLGNL-FNNVSSSLNERWDAGSSNGCRQGRSPLSEVDATVPTP 429
           GY  G + N+  N VS+ + + ++A +S G   G S  +E+D   P P
Sbjct: 614 GYT-GCIKNIRMNGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660


>U28729-6|AAA68292.1|  549|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoforma protein.
          Length = 549

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 86  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPFRVQGAHPSGP 211
           SS+    V++ L++ Y +K E        +P  VQG   SGP
Sbjct: 131 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 172


>U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformd protein.
          Length = 674

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 86  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPFRVQGAHPSGP 211
           SS+    V++ L++ Y +K E        +P  VQG   SGP
Sbjct: 256 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 297


>U28729-4|AAN60496.1|  599|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformc protein.
          Length = 599

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 86  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPFRVQGAHPSGP 211
           SS+    V++ L++ Y +K E        +P  VQG   SGP
Sbjct: 181 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 222


>U28729-3|AAO38608.1|  612|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoforme protein.
          Length = 612

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 86  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPFRVQGAHPSGP 211
           SS+    V++ L++ Y +K E        +P  VQG   SGP
Sbjct: 194 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 235


>U28729-2|AAK77625.1|  626|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformb protein.
          Length = 626

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 86  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPFRVQGAHPSGP 211
           SS+    V++ L++ Y +K E        +P  VQG   SGP
Sbjct: 208 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 249


>U28729-1|ABB88209.1|  673|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformg protein.
          Length = 673

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 86  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPFRVQGAHPSGP 211
           SS+    V++ L++ Y +K E        +P  VQG   SGP
Sbjct: 255 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 296


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 399 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 316
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,318,048
Number of Sequences: 27780
Number of extensions: 395294
Number of successful extensions: 1203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)