Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_P13
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    29   2.8  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   5.0  
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...    28   6.6  
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...    28   6.6  
03_05_0067 - 20460206-20460703,20461255-20461530                       28   6.6  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/49 (32%), Positives = 16/49 (32%)
 Frame = +1

Query: 463  PPPXXXGXXPPPPPXFXXXKKGXXXXXXXXGXXXPXXXGGXXXXXPPPP 609
            PPP   G   PPPP       G        G   P    G     PPPP
Sbjct: 1174 PPPNAHGGVAPPPPP-PRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPP 1221


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +1

Query: 463 PPPXXXGXXPPPPPXFXXXKKGXXXXXXXXGXXXPXXXGG 582
           PPP   G  PPPPP     K G        G   P    G
Sbjct: 355 PPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAPG 394



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 5/54 (9%)
 Frame = +1

Query: 463 PPPXXXGXXPPPPP-----XFXXXKKGXXXXXXXXGXXXPXXXGGXXXXXPPPP 609
           PPP      PPPPP           KG        G   P    G     PPPP
Sbjct: 317 PPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPP 370



 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/49 (36%), Positives = 18/49 (36%)
 Frame = +1

Query: 463 PPPXXXGXXPPPPPXFXXXKKGXXXXXXXXGXXXPXXXGGXXXXXPPPP 609
           PPP   G  PPPPP      KG            P   GG     PPPP
Sbjct: 346 PPPPAKGPPPPPPP------KG-------PSPPPPPPPGGKKGGPPPPP 381


>12_01_0435 +
          3428552-3428636,3429242-3429352,3429434-3429738,
          3429821-3430230,3430323-3430556,3430934-3431378,
          3432300-3432390,3433292-3433518,3433786-3433861,
          3434009-3434134,3434221-3434384
          Length = 757

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 32 MSHRKFQXPVXGXIGIYPKXSS 97
          MSHRKF+ P  G +G  P+  S
Sbjct: 1  MSHRKFEHPRHGSLGFLPRKRS 22


>11_01_0427 +
          3274817-3274901,3275587-3275697,3275979-3276283,
          3276406-3276815,3276942-3277200
          Length = 389

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 32 MSHRKFQXPVXGXIGIYPKXSS 97
          MSHRKF+ P  G +G  P+  S
Sbjct: 1  MSHRKFEHPRHGSLGFLPRKRS 22


>03_05_0067 - 20460206-20460703,20461255-20461530
          Length = 257

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/54 (29%), Positives = 17/54 (31%)
 Frame = +1

Query: 463 PPPXXXGXXPPPPPXFXXXKKGXXXXXXXXGXXXPXXXGGXXXXXPPPPXFXXP 624
           PPP      PPPPP +              G   P    G     PPPP    P
Sbjct: 5   PPPPQWAMGPPPPPQYFQAGPPPPPPQYFQGAHPPAAMWG----QPPPPQAAPP 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,213,449
Number of Sequences: 37544
Number of extensions: 403450
Number of successful extensions: 2200
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)