Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_P13
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.48
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.48
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.48
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 2.6
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 2.6
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 2.6
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 28 7.8
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 28 7.8
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 28 7.8
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 28 7.8
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 28 7.8
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 28 7.8
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = +1
Query: 463 PPPXXXGXXPPPPPXFXXXKKGXXXXXXXXGXXXPXXXGGXXXXXPPPP 609
PPP G PPPPP G G P G PPPP
Sbjct: 289 PPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGS----PPPPP 333
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = +1
Query: 463 PPPXXXGXXPPPPPXFXXXKKGXXXXXXXXGXXXPXXXGGXXXXXPPPP 609
PPP G PPPPP G G P G PPPP
Sbjct: 310 PPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGS----PPPPP 354
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = +1
Query: 463 PPPXXXGXXPPPPPXFXXXKKGXXXXXXXXGXXXPXXXGGXXXXXPPPP 609
PPP G PPPPP G G P G PPPP
Sbjct: 295 PPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGS----PPPPP 339
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 31.1 bits (67), Expect = 0.84
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = +1
Query: 463 PPPXXXGXXPPPPPXFXXXKKGXXXXXXXXGXXXPXXXGGXXXXXPPPP 609
PPP G PPPPP F G G P PPPP
Sbjct: 75 PPPPGPGGIPPPPPMFAG---GIPPPPPMMGGIPPPPPMFGAPPPPPPP 120
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/51 (33%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Frame = +1
Query: 463 PPPXXXGXXPPPPPXFXXXKKGXXXXXXXXGXXXPXXXG--GXXXXXPPPP 609
PPP G PPPPP G P G G PPPP
Sbjct: 288 PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPP 338
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/51 (33%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Frame = +1
Query: 463 PPPXXXGXXPPPPPXFXXXKKGXXXXXXXXGXXXPXXXG--GXXXXXPPPP 609
PPP G PPPPP G P G G PPPP
Sbjct: 298 PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPP 348
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/56 (33%), Positives = 20/56 (35%)
Frame = +1
Query: 463 PPPXXXGXXPPPPPXFXXXKKGXXXXXXXXGXXXPXXXGGXXXXXPPPPXFXXPKK 630
PPP G PPPPP KG G P G P P + PKK
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFKG--------GPPPPPPPGMFAPMAPVIPDYLPPKK 808
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/56 (33%), Positives = 20/56 (35%)
Frame = +1
Query: 463 PPPXXXGXXPPPPPXFXXXKKGXXXXXXXXGXXXPXXXGGXXXXXPPPPXFXXPKK 630
PPP G PPPPP KG G P G P P + PKK
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFKG--------GPPPPPPPGMFAPMAPVIPDYLPPKK 808
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/56 (33%), Positives = 20/56 (35%)
Frame = +1
Query: 463 PPPXXXGXXPPPPPXFXXXKKGXXXXXXXXGXXXPXXXGGXXXXXPPPPXFXXPKK 630
PPP G PPPPP KG G P G P P + PKK
Sbjct: 344 PPPPPGGCPPPPPPPPPGGFKG--------GPPPPPPPGMFAPMAPVIPDYLPPKK 391
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal
protein L3 protein.
Length = 401
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 32 MSHRKFQXPVXGXIGIYPKXSS 97
MSHRKF P G +G PK S
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRS 22
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal
protein L3 protein.
Length = 401
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 32 MSHRKFQXPVXGXIGIYPKXSS 97
MSHRKF P G +G PK S
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRS 22
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 32 MSHRKFQXPVXGXIGIYPKXSS 97
MSHRKF P G +G PK S
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRS 22
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 32 MSHRKFQXPVXGXIGIYPKXSS 97
MSHRKF P G +G PK S
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRS 22
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 32 MSHRKFQXPVXGXIGIYPKXSS 97
MSHRKF P G +G PK S
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRS 22
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 32 MSHRKFQXPVXGXIGIYPKXSS 97
MSHRKF P G +G PK S
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRS 22
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 32 MSHRKFQXPVXGXIGIYPKXSS 97
MSHRKF P G +G PK S
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRS 22
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 32 MSHRKFQXPVXGXIGIYPKXSS 97
MSHRKF P G +G PK S
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRS 22
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,576,400
Number of Sequences: 27780
Number of extensions: 199866
Number of successful extensions: 952
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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