Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_P12
(846 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 162 4e-40
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 158 4e-39
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.16
03_05_0366 - 23505755-23506441 31 1.2
02_04_0457 + 23093020-23093343,23093798-23093806 29 6.2
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 29 6.2
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 28 8.1
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 28 8.1
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 162 bits (393), Expect = 4e-40
Identities = 78/129 (60%), Positives = 86/129 (66%)
Frame = +3
Query: 183 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 362
VF+AP+RPD+V VH +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 31 VFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHR 90
Query: 363 SGQGAFGNMCRGGRMFAPTKPWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 542
+GQGAFGNMCRGGRMFAPTK W ARGH IE
Sbjct: 91 AGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIET 150
Query: 543 IPELPLVCS 569
+PELPLV S
Sbjct: 151 VPELPLVIS 159
Score = 52.0 bits (119), Expect = 6e-07
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +1
Query: 535 LKRFPNFPWFVADKVQEINKTKQAVILP*GASXAWSDILKVYXSQRLRAGKGKMRNRGRI 714
++ P P ++D + I KT QA+ + A++D K S +R GKGKMRNR I
Sbjct: 148 IETVPELPLVISDSAESIEKTSQAIKILKQVG-AYADAEKAKDSVGIRPGKGKMRNRRYI 206
Query: 715 XA*GALIIFXXDXG-LTRXFXNIPG 786
G LI++ + + + F N+PG
Sbjct: 207 NRKGPLIVYGTEGSKIVKAFRNLPG 231
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 158 bits (384), Expect = 4e-39
Identities = 77/132 (58%), Positives = 85/132 (64%)
Frame = +3
Query: 174 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 353
+P V +APIRPD+V H +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGG
Sbjct: 27 MPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGG 86
Query: 354 THRSGQGAFGNMCRGGRMFAPTKPWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 533
THR+GQGAFGNMCRGGRMFAPTK W ARGH
Sbjct: 87 THRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLARGHR 146
Query: 534 IEKIPELPLVCS 569
IE +PE PLV S
Sbjct: 147 IEGVPEFPLVVS 158
Score = 55.6 bits (128), Expect = 5e-08
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +1
Query: 547 PNFPWFVADKVQEINKTKQAVILP*GASXAWSDILKVYXSQRLRAGKGKMRNRGRIXA*G 726
P FP V+D ++ I KT Q++ + A++D K S +RAGKGKMRNR I G
Sbjct: 151 PEFPLVVSDSIESIEKTAQSIKVL-KQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKG 209
Query: 727 ALIIFXXDXG-LTRXFXNIPG 786
LI++ + + + F N+PG
Sbjct: 210 PLIVYGTEGSKVVKAFRNLPG 230
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.16
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +3
Query: 294 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 404
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 180 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 356
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 357 HRSGQGA 377
+ + + A
Sbjct: 168 NDNDEEA 174
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +3
Query: 279 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 383
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -1
Query: 441 DANAARASWGRTYVH--HDTCYRRHPDRTYEYHH-HGHAEFGRQHVRYPMIRH 292
D AA + T +H HD Y T+++HH HGH FGR H +P H
Sbjct: 122 DQAAAPPATDATVIHMVHDYPY------THDHHHGHGHHLFGRDH--WPASHH 166
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 527 SSSLNECWDAGSSNGCRQGRSPLSEVGATMPTPP 426
SSSL A SSNGC +P + G P PP
Sbjct: 21 SSSLPTSPSAASSNGCGGNDAPAAVNGFAPPPPP 54
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/34 (29%), Positives = 14/34 (41%)
Frame = -1
Query: 372 PDRTYEYHHHGHAEFGRQHVRYPMIRHWFGDQPP 271
P + +HHHGH + + H G PP
Sbjct: 33 PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,219,935
Number of Sequences: 37544
Number of extensions: 490743
Number of successful extensions: 1574
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1564
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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