Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_P11
(847 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.089
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.12
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.5
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 5.8
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 7.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 7.7
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.3 bits (70), Expect = 0.089
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 596 PPPPPPPXXXXXKXXPPPP 540
PPPPPPP PPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPP 28
Score = 32.3 bits (70), Expect = 0.089
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 595 PPPPPPPXXXXKKXXPPPP 539
PPPPPPP PPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPP 28
Score = 31.9 bits (69), Expect = 0.12
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 596 PPPPPPPXXXXXKXXPPPP 540
PPPPPPP PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPP 27
Score = 31.9 bits (69), Expect = 0.12
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 595 PPPPPPPXXXXKKXXPPPP 539
PPPPPPP PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPP 27
Score = 29.5 bits (63), Expect = 0.63
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 595 PPPPPPPXXXXKKXXPPPP 539
PPPPPP + PPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPPP 29
Score = 29.1 bits (62), Expect = 0.83
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 596 PPPPPPPXXXXXKXXPPPP 540
PPPPPP + PPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPPP 29
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -1
Query: 595 PPPPPPPXXXXKKXXPPP 542
PPPPPPP K+ P
Sbjct: 24 PPPPPPPGYVKKRKNKTP 41
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.12
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 596 PPPPPPPXXXXXKXXPPPP 540
PPPPPPP PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779
Score = 31.5 bits (68), Expect = 0.16
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 595 PPPPPPPXXXXKKXXPPPP 539
PPPPPPP PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779
Score = 31.5 bits (68), Expect = 0.16
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 596 PPPPPPPXXXXXKXXPPPP 540
PPPPPPP PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780
Score = 31.5 bits (68), Expect = 0.16
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 595 PPPPPPPXXXXKKXXPPPP 539
PPPPPPP PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -3
Query: 596 PPPPPPPXXXXXKXXPPPP 540
PPPPPP PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 595 PPPPPPPXXXXKKXXPPPP 539
PPPPPP PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -3
Query: 596 PPPPPPPXXXXXKXXPPPP 540
PPPPPPP P PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPP 355
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 595 PPPPPPPXXXXKKXXPPPP 539
PPPPPPP P PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPP 355
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -1
Query: 592 PPPPPPXXXXKKXXPPPP 539
PPPPPP PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378
Score = 25.8 bits (54), Expect = 7.7
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -2
Query: 594 PPPPPPXXXXXKXXXPPP 541
PPPPPP PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -1
Query: 595 PPPPPPPXXXXKK 557
PPPPPPP KK
Sbjct: 1096 PPPPPPPAEVEKK 1108
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 7.7
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +3
Query: 498 WGGGGGGXXXXXXXGGGGXXFXXXXXGGGGGG 593
+GGG GG GGG GG GGG
Sbjct: 226 FGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGG 257
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 7.7
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -3
Query: 593 PPPPPPXXXXXKXXPPPP 540
PPPPPP P PP
Sbjct: 5 PPPPPPAPAPAAAAPAPP 22
Score = 25.8 bits (54), Expect = 7.7
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -1
Query: 592 PPPPPPXXXXKKXXPPPP 539
PPPPPP P PP
Sbjct: 5 PPPPPPAPAPAAAAPAPP 22
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,621,376
Number of Sequences: 5004
Number of extensions: 21433
Number of successful extensions: 317
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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