Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_P10
(900 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0610 - 25449085-25453284 35 0.10
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 32 0.71
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 0.94
09_02_0252 - 6315834-6315959,6316074-6317018 30 2.9
11_01_0066 - 536281-537196,537397-537452 29 3.8
02_04_0452 + 23044190-23045227 29 3.8
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.8
01_06_0404 + 29098141-29098214,29098459-29098673,29099491-290995... 29 5.0
04_01_0041 - 464695-464850,467485-469029 29 6.7
01_05_0227 - 19512866-19514983 29 6.7
08_02_0875 + 22103903-22106293 28 8.8
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831... 28 8.8
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 8.8
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 34.7 bits (76), Expect = 0.10
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 535 PPSPAISATSTRSSNPRFHTPTTPDLTSIS-INPLTPYXKEFAPGLKPPLSSXAHQRISP 711
PP+P A+S P HTP+ P+ T S +P TP K +P PP + H SP
Sbjct: 618 PPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSP---PPPTPEGHTP-SP 673
Query: 712 PR 717
P+
Sbjct: 674 PK 675
Score = 32.7 bits (71), Expect = 0.41
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 535 PPSPAISATSTRSSNPRFHTPTTPDLT-SISINPLTPYXKEFAPGLKPPLSSXAHQRISP 711
PP+P A+S P HTP+ P T +P TP + +P PP + H SP
Sbjct: 651 PPTPESKASSPPPPTPEGHTPSPPKSTPPTEKSPPTPESESSSP---PPPAPEGHMP-SP 706
Query: 712 PR 717
P+
Sbjct: 707 PK 708
Score = 30.3 bits (65), Expect = 2.2
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Frame = +1
Query: 535 PPSPAISATSTRSSNPRFHTP-----TTPDLTSISINPLT----PYXKEFAPGLKPPLSS 687
PP+P A+S P HTP + P+ S I P + P +E+ P PP SS
Sbjct: 717 PPTPESEASSPPPPAPEGHTPSPPKSSPPEEKSPPIPPTSHTSPPTPEEYTP--SPPKSS 774
Query: 688 XAHQRISPPRH 720
++ SPP H
Sbjct: 775 PPEEK-SPPPH 784
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 535 PPSPAISATSTRSSNPRFHTPTTPDLT-SISINPLTPYXKEFAPGLKPPLSSXAHQRISP 711
PP+P ++S P H P+ P T + +P TP + +P PP + H SP
Sbjct: 684 PPTPESESSSPPPPAPEGHMPSPPKSTPPVEKSPPTPESEASSP---PPPAPEGHTP-SP 739
Query: 712 PR 717
P+
Sbjct: 740 PK 741
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 31.9 bits (69), Expect = 0.71
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +1
Query: 529 IKPPSPAISATSTR-SSNPR--FHTPTTPDLTSISINPLTP 642
I PPSPA + S+R S +PR F TP T T+ S +P +P
Sbjct: 25 ITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSPPSP 65
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.5 bits (68), Expect = 0.94
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 547 AISATSTRSSNPRFHTPTTP 606
A S+T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>09_02_0252 - 6315834-6315959,6316074-6317018
Length = 356
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 535 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSXAHQR 702
P SP +S +S+R+ +PR H P TP+ E P PP S+ + +R
Sbjct: 46 PSSPRLSTSSSRTPSPRAHRP----------RAATPFANENHPPPPPPPSTASRRR 91
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +1
Query: 535 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSXAHQRISPP 714
PP P+ + T+TR+S PT P + + ++ P P + A P + + +P
Sbjct: 238 PPPPSPTPTTTRAS------PTPPPIPTATVRPPPPLPR--ATVTPTPTTPPSTATTTPI 289
Query: 715 RHWAWLKG 738
W W+ G
Sbjct: 290 PTWVWVGG 297
>02_04_0452 + 23044190-23045227
Length = 345
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 482 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPP 604
H +L H+ +A SH SR H P + P S PP
Sbjct: 166 HGCLLLHHAGHGHGHAHSHSHSHSRAHNPSTRPPTSAPPPP 206
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.8
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 285 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 458
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 459 VEGVNVLATPSSSRITIGGLALMHQ 533
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>01_06_0404 +
29098141-29098214,29098459-29098673,29099491-29099596,
29099686-29100235,29100332-29100429,29100519-29100764,
29100867-29100981,29101092-29101305,29101402-29101991
Length = 735
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 538 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAP 663
P+P ++A S+R NP PD+T+ ++ + Y + +P
Sbjct: 447 PAPVMAAFSSRGPNPITPQILKPDITAPGVSVIAAYSEAVSP 488
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 246 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 422
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 423 TVD 431
+D
Sbjct: 100 PLD 102
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 463 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 371
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>08_02_0875 + 22103903-22106293
Length = 796
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 538 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAP 663
P+P ++A S R NP+ PDL + +N L + P
Sbjct: 506 PAPVVAAFSARGPNPQSPEILKPDLIAPGLNILAAWPSGVGP 547
>06_01_1052 +
8312752-8312862,8312969-8313041,8313285-8313362,
8313443-8313523,8313706-8313779,8313865-8313919,
8314031-8314079,8314222-8314359,8314455-8314536,
8315131-8315209,8315357-8315400,8315479-8315673,
8316110-8316185,8317427-8317507,8317623-8317703,
8318128-8318204,8318402-8318499,8318672-8318809,
8319397-8319478,8319564-8319642,8319885-8319931,
8320014-8320228,8320330-8320450,8320529-8320648,
8320731-8320849,8320964-8321036,8321112-8321231,
8321538-8321606,8321756-8321926,8322004-8322051,
8322192-8322333,8323244-8323341,8323684-8323828,
8323928-8324013,8324112-8324222,8324456-8324530,
8324836-8324901,8325036-8325224,8325315-8325425,
8326616-8326696,8327192-8327371
Length = 1385
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 579 SPIPYTNHPRLNIHFHQSPDAVLXGVRAGVKASVV 683
S I N +IHF S +A+ GVRAG+ S++
Sbjct: 174 SKIKLVNDLLESIHFIASIEAMFLGVRAGIHPSII 208
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 8.8
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +3
Query: 237 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 416
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 417 PVTVDLCWTTADVTVEGVNVLATPSS 494
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,967,364
Number of Sequences: 37544
Number of extensions: 487941
Number of successful extensions: 1443
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1442
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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