Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_P09
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    95   8e-21
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    93   5e-20
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces...    26   7.1  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    25   9.4  
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo...    25   9.4  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 95.5 bits (227), Expect = 8e-21
 Identities = 48/96 (50%), Positives = 56/96 (58%)
 Frame = +3

Query: 135 LGQKMLTSRMETYVYKRRADGTHVINLRRTWGKTCSGCSCCRSHREPADVFVISSRAFGQ 314
           +G K L  RME YV+KRR+DG H+INL +TW K         +   PADV VISSR +G 
Sbjct: 28  IGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIENPADVCVISSRPYGH 87

Query: 315 RAVLKFGAHTGCYAYCGTFHTRCFNNQIQAXFRXTR 422
           RAVLKF AHTG  A  G F    F N I   +R  R
Sbjct: 88  RAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPR 123



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +2

Query: 80  VLALNEEDVTKMLAATTHLGAENV 151
           VL   ++D+  +LAA +H+G++N+
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNL 33


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 92.7 bits (220), Expect = 5e-20
 Identities = 44/96 (45%), Positives = 56/96 (58%)
 Frame = +3

Query: 135 LGQKMLTSRMETYVYKRRADGTHVINLRRTWGKTCSGCSCCRSHREPADVFVISSRAFGQ 314
           +G K L  RM+ YV+KRR+DG H++NL +TW K         +   PADV V+S+R +G 
Sbjct: 27  IGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVIATIENPADVCVVSTRTYGH 86

Query: 315 RAVLKFGAHTGCYAYCGTFHTRCFNNQIQAXFRXTR 422
           RAVLKF AHTG  A  G F    F N I   +R  R
Sbjct: 87  RAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPR 122



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +2

Query: 68  GGLDVLALNEEDVTKMLAATTHLGAENV 151
           G  ++L   +ED+ ++LAA  H+G++N+
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNL 32


>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 264 GYDSTSSQNKFFPRYDAS*SHGYH 193
           GYD   S NKF P +  +  H YH
Sbjct: 232 GYDFPWSLNKFLPIWAGADHHDYH 255


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/46 (30%), Positives = 17/46 (36%)
 Frame = +3

Query: 228 GKTCSGCSCCRSHREPADVFVISSRAFGQRAVLKFGAHTGCYAYCG 365
           G +C      R      DVF+   + FG RA       T  Y Y G
Sbjct: 166 GPSCQNQRFQRHEFAKVDVFLTEKKGFGLRADANLPKDTFVYEYIG 211


>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +2

Query: 131 HLGAENVNFQNGDLCLQTTC*WYP--CDQL 214
           H G EN+ +Q GDL +     W    CD+L
Sbjct: 308 HEGPENMEWQKGDLVIHFAGCWVENRCDEL 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,956,516
Number of Sequences: 5004
Number of extensions: 55009
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)