Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_P09
(795 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 85 8e-17
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 85 8e-17
05_04_0268 - 19574540-19574582,19574664-19574755,19574843-195749... 31 1.4
09_04_0010 - 13686424-13686822 29 4.3
01_06_1212 + 35459675-35460073 29 4.3
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 5.6
04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002 28 7.4
09_04_0688 + 19475847-19477034,19477133-19477384,19477778-194778... 28 9.8
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 84.6 bits (200), Expect = 8e-17
Identities = 45/112 (40%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Frame = +3
Query: 90 STRKMSPKCLLQPPI-LGQKMLTSRMETYVYKRRADGTHVINLRRTWGKTCSGCSCCRSH 266
S R+ + +L + LG K +ME YVYKRR DG ++INL +TW K +
Sbjct: 13 SQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAI 72
Query: 267 REPADVFVISSRAFGQRAVLKFGAHTGCYAYCGTFHTRCFNNQIQAXFRXTR 422
P D+ V S+R +GQRAVLKF +TG +A G F NQ+Q F R
Sbjct: 73 ENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPR 124
Score = 31.9 bits (69), Expect = 0.60
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 83 LALNEEDVTKMLAATTHLGAENVNFQ 160
L+ E+D+ MLAA HLG +N +FQ
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQ 37
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 84.6 bits (200), Expect = 8e-17
Identities = 42/96 (43%), Positives = 54/96 (56%)
Frame = +3
Query: 135 LGQKMLTSRMETYVYKRRADGTHVINLRRTWGKTCSGCSCCRSHREPADVFVISSRAFGQ 314
LG K +ME YVYKRR+DG ++INL +TW K + P D+ V S+R +GQ
Sbjct: 29 LGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQ 88
Query: 315 RAVLKFGAHTGCYAYCGTFHTRCFNNQIQAXFRXTR 422
RAVLKF +TG +A G F NQ+Q F R
Sbjct: 89 RAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPR 124
Score = 34.7 bits (76), Expect = 0.086
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 50 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQ 160
++A G L+ E+DV MLAA HLG +N +FQ
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQ 37
>05_04_0268 -
19574540-19574582,19574664-19574755,19574843-19574920,
19575095-19575232,19575478-19575606,19575889-19576018,
19576171-19576348,19576715-19576853,19577031-19577120,
19577260-19577421,19577556-19577720,19577909-19578046,
19578657-19578836,19579129-19579257,19579442-19579677,
19579795-19579957,19580030-19580070,19580162-19580489,
19581416-19581553,19581670-19581873
Length = 966
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 198 THVINLRRTWGKTC-SGCSCCRSHREPADVFVISSRAFGQRAVLKFGAHTG 347
+H + R WGK C SGCS R + + + + VI +A + L TG
Sbjct: 547 SHAAVVARGWGKCCVSGCSSVRVN-DASKIVVIEDKALHEGEWLSLNGSTG 596
>09_04_0010 - 13686424-13686822
Length = 132
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = +3
Query: 99 KMSPKCLLQPPILGQKMLTSRMETYVYKRRADGTHVINLRRTWGKTCSGCSCCRSHREPA 278
+ S +CLL PP G++ + R G +V+ R W CSG R R
Sbjct: 61 RSSGRCLLHPPPQGRRSPHLHHPELLGTR--SGLYVVRDHRIWSPPCSGHRLLRLLRR-R 117
Query: 279 DVFVISSRAFG 311
+FV S+ G
Sbjct: 118 RLFVYSATELG 128
>01_06_1212 + 35459675-35460073
Length = 132
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = +3
Query: 99 KMSPKCLLQPPILGQKMLTSRMETYVYKRRADGTHVINLRRTWGKTCSGCSCCRSHREPA 278
+ S +CLL PP G++ + R G +V+ R W CSG R R
Sbjct: 61 RSSGRCLLHPPPQGRRSPHLHHPELLGTR--SGLYVVRDHRIWSPPCSGHRLLRLLRR-R 117
Query: 279 DVFVISSRAFG 311
+FV S+ G
Sbjct: 118 RLFVYSATELG 128
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 150 TFSAPRWVVAASILVTSSSLRASTSNP 70
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002
Length = 877
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +3
Query: 63 CRED*TCSPSTRKMSPKCLLQPPILGQKMLTSRMETYVYKRRADGTHVINLRRTWGKTC 239
C D + + +T + K L + L S ++ ++ + TH +L +TWG C
Sbjct: 465 CGGDCSAATTTHEHDTKASLPRSFVSSSSLPSWLQHCRDQQLQESTHFADLGKTWGSIC 523
>09_04_0688 +
19475847-19477034,19477133-19477384,19477778-19477858,
19477907-19478072,19479009-19479445,19479781-19479837
Length = 726
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 117 LLQPPILGQKMLTSRMETYVYKRRADGTHVINLRRTWGKTCSGCS 251
L PP+L L+ T+++ G+H +LR T G TC G S
Sbjct: 271 LAHPPLLN---LSPLGPTWMHGTNTVGSHGESLRETEGSTCEGYS 312
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,728,354
Number of Sequences: 37544
Number of extensions: 455764
Number of successful extensions: 900
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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