Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_P09
         (795 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...    94   9e-20
AC006615-6|AAK68228.1|  531|Caenorhabditis elegans Hypothetical ...    29   3.8  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score = 94.3 bits (224), Expect = 9e-20
 Identities = 46/104 (44%), Positives = 59/104 (56%)
 Frame = +3

Query: 111 KCLLQPPILGQKMLTSRMETYVYKRRADGTHVINLRRTWGKTCSGCSCCRSHREPADVFV 290
           K L     LG   L  +M+ YVYKRR DG ++IN+++TW K         +   PADV V
Sbjct: 17  KLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLLLAARAIAAVENPADVVV 76

Query: 291 ISSRAFGQRAVLKFGAHTGCYAYCGTFHTRCFNNQIQAXFRXTR 422
           +S+R + QRA+LKF AHTG  A  G F   C  NQIQ  F+  R
Sbjct: 77  VSARPYAQRALLKFAAHTGATAIFGRFSPGCLTNQIQKTFKEPR 120



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 20/33 (60%), Positives = 23/33 (69%)
 Frame = +2

Query: 62  MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQ 160
           MSGG    AL EEDV K+LA   HLG+ N+NFQ
Sbjct: 1   MSGGAAHSALTEEDVMKLLATQAHLGSTNLNFQ 33


>AC006615-6|AAK68228.1|  531|Caenorhabditis elegans Hypothetical
           protein C36B7.2 protein.
          Length = 531

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +1

Query: 268 ENPLMCSSSHHGPSVSVLY*SLA---RTPGATPIAGRFT 375
           E P     + HGP VS +Y   A   + PGATPI   FT
Sbjct: 432 EAPKHIVITDHGPIVSFIYTKAADHRKIPGATPIGSFFT 470


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,254,644
Number of Sequences: 27780
Number of extensions: 358749
Number of successful extensions: 654
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)