Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_P05
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   0.30 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   2.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect(2) = 0.30
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 583 PPPXXXKXKGGXPPPPPXXG 524
           P P      GG PPPPP  G
Sbjct: 750 PVPPPAPIMGGPPPPPPPPG 769



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 595 GXGXPPPXXXKXKGGXPPPPP 533
           G   PPP      G  PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779



 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 595 GXGXPPPXXXKXKGGXPPPPP 533
           G   PPP       G PPPPP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPP 780



 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/35 (31%), Positives = 13/35 (37%)
 Frame = -1

Query: 776 GXXPXPPPPXXXSGXGXXGXDRPXPPXXXXKKXYF 672
           G  P PPPP   +G G      P P        Y+
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYY 793



 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/43 (30%), Positives = 13/43 (30%)
 Frame = +1

Query: 463 PPXXGXTPXPPXGXIKKXXPPPXXGGGGXXPPXXXXXGGXXXP 591
           PP     P P    I    P P  GG    PP     G    P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 777 GGXXXPPPPXRXFGXXXXGXGPXPPP 700
           GG   PPPP    G    G  P PPP
Sbjct: 759 GGPPPPPPPP---GVAGAGPPPPPPP 781



 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 583 PPPXXXKXKGGXPPPPP 533
           PPP      G  PPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPP 781



 Score = 22.2 bits (45), Expect(2) = 0.30
 Identities = 9/25 (36%), Positives = 9/25 (36%)
 Frame = -2

Query: 427 PPXGGXXXXXXGXPPPPPXGXKKXG 353
           PP  G        PPPPP      G
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.4 bits (48), Expect(2) = 2.9
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -2

Query: 427 PPXGGXXXXXXGXPPPPPXGXKK 359
           PP  G        PPPPP   KK
Sbjct: 13  PPPPGFEPPSQPPPPPPPGYVKK 35



 Score = 21.8 bits (44), Expect(2) = 2.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 556 GGXPPPPPXXG 524
           G  PPPPP  G
Sbjct: 7   GNPPPPPPPPG 17


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 21/86 (24%), Positives = 23/86 (26%), Gaps = 1/86 (1%)
 Frame = -2

Query: 628 PPXKKKKXNXXGXGXPPPXXXKXKGGX-PPPPPXXGGGXFFLXNXXGGXGXPPXXGGXPX 452
           PP    + N    G PP           PPPPP        +     G   PP     P 
Sbjct: 313 PPPPPSRRNR---GKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP--PPR 367

Query: 451 XXKKKSXXPPXGGXXXXXXGXPPPPP 374
                   PP           P PPP
Sbjct: 368 SAPSTGRQPPPLSSSRAVSNPPAPPP 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,993
Number of Sequences: 5004
Number of extensions: 33571
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)