Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_O11
         (942 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.57 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.8 bits (54), Expect = 0.57
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 810  PPPPPPPXGG 781
            PPPPPPP  G
Sbjct: 1356 PPPPPPPSSG 1365



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 810  PPPPPPP 790
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 748  PPPPPPP 728
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 748  PPPPPPP 728
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 21.8 bits (44), Expect = 9.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 747  PPPPPXPXXXG 715
            PPPPP P   G
Sbjct: 1355 PPPPPPPPSSG 1365


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 810 PPPPPPPXGG 781
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 822  GXXXPPPPPP 793
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864



 Score = 21.8 bits (44), Expect = 9.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 16   SWEKFPPKATWVGXYLGFF 72
            +W K PP+  W G  LG++
Sbjct: 996  TW-KPPPREDWNGEILGYY 1013


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.150    0.519 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,841
Number of Sequences: 438
Number of extensions: 5649
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30839445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)