Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_O08
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    32   0.12 
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   1.5  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      28   2.0  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    26   6.1  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    26   6.1  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    26   8.1  

>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = +2

Query: 62  PNVGGPDMVVRRLYTGVVRSMALYGAPVRCHALTRDNVAAL--RRPQRAIAVRAVRGYRT 235
           PN+GG    +R++  GV+  MA  G PV C     D + A+  R       ++ +  +  
Sbjct: 722 PNMGGKSTYIRQV--GVITVMAQIGCPVPCEVADLDIIDAILARVGASDSQLKGISTFMA 779

Query: 236 VSFEAACVLAGTPPWDL 286
              E A +L    P  L
Sbjct: 780 EMLETATILRAATPRSL 796


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1060

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 131  YGAPVRCHALTRDNVAALRRPQRAIAVRAVRG 226
            YG    C  LT +N++A  R Q   AVR V G
Sbjct: 1011 YGPSFICKLLTHENISASHRQQLQSAVRNVLG 1042


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 558 YLHLIARREPTPKCHHCSGCSEDTAEH 638
           Y HL    + +P+C HC    ED A H
Sbjct: 305 YCHLDYHEQFSPRCKHCKTPIEDQAVH 331


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 359 AAEVRARKLESRRAVFEAWSRRL 427
           A +V+ +K+E+RR VF+A S ++
Sbjct: 135 ALDVKEKKMENRRLVFDALSTKI 157


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 599 PPLQWLQRGHGGAHARVLXLFRG 667
           P L W QRG+GG  A VL L  G
Sbjct: 341 PDLDWTQRGYGG--ALVLYLLMG 361


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 428 ADPAYGRRTVEAIRPVLLDWVNRPRTSHL-PSDAGAHGTRLFRSLPAPHRPEGADA 592
           A P + R + E  +P LL       +SHL P+ A +  +RL+ S PAP  P  + +
Sbjct: 214 AKPPFPRESTE--KP-LLSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSS 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,047,504
Number of Sequences: 5004
Number of extensions: 56150
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)