Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_N14
(888 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 43 3e-06
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 43 3e-06
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 42 8e-06
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 42 8e-06
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 41 1e-05
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 40 4e-05
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 39 5e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 38 1e-04
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 37 2e-04
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 35 9e-04
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 35 0.001
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 35 0.001
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 35 0.001
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 34 0.002
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 34 0.002
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 33 0.003
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 33 0.003
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 33 0.003
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 33 0.005
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 31 0.011
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 28 0.099
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 27 0.17
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 26 0.40
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 26 0.40
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 26 0.40
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 23 3.7
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 22 6.5
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 22 8.6
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 8.6
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 43.2 bits (97), Expect = 3e-06
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 315 PRERLWRPDVVLLNAA-ATTAGDYALRARVSNSGSVSWIKRXDXXTPXSMXLDNXPNDMQ 491
P + +WRPD+VL N A A +A + + G V W + + ++ P D Q
Sbjct: 106 PSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQ 165
Query: 492 TCTCKFG 512
TC KFG
Sbjct: 166 TCVLKFG 172
Score = 22.2 bits (45), Expect = 6.5
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 161 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG 295
++ + L L L N++ T + ++ +W D +L W E+G
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYG 98
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 43.2 bits (97), Expect = 3e-06
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 315 PRERLWRPDVVLLNAA-ATTAGDYALRARVSNSGSVSWIKRXDXXTPXSMXLDNXPNDMQ 491
P + +WRPD+VL N A A +A ++ +G V W + + ++ P D Q
Sbjct: 102 PSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDEQ 161
Query: 492 TCTCKFG 512
TC KFG
Sbjct: 162 TCVMKFG 168
Score = 22.6 bits (46), Expect = 4.9
Identities = 6/18 (33%), Positives = 12/18 (66%)
Frame = +2
Query: 242 LQMNWIDKRLSWNAGEWG 295
++ +W D +L W+ E+G
Sbjct: 77 VEQSWYDYKLKWDPKEYG 94
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 41.9 bits (94), Expect = 8e-06
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = +3
Query: 315 PRERLWRPDVVLLNAAATTAGDYALRAR----VSNSGSVSWIKRXDXXTPXSMXLDNXPN 482
P +++W+PD+VL N A G+Y +R + + +G V W+ + ++ + P
Sbjct: 104 PPDKVWKPDIVLFNNAD---GNYEVRYKSNVLIYPNGDVLWVPPAIYQSSCTIDVTYFPF 160
Query: 483 DMQTCTCKFG 512
D QTC KFG
Sbjct: 161 DQQTCIMKFG 170
Score = 25.0 bits (52), Expect = 0.92
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 161 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG 295
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 41.9 bits (94), Expect = 8e-06
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +3
Query: 315 PRERLWRPDVVLLNAAATTAGDYAL----RARVSNSGSVSWIKRXDXXTPXSMXLDNXPN 482
P + +WRPD+VL N A G+Y + +A V SG V W + S+ ++ P
Sbjct: 106 PSDHIWRPDIVLYNNA---DGNYEVTLMTKATVYYSGLVVWQPPAVYKSSCSIDVEFFPY 162
Query: 483 DMQTCTCKFG 512
D+QTC K G
Sbjct: 163 DVQTCVLKLG 172
Score = 22.2 bits (45), Expect = 6.5
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 161 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG 295
++ + L L L N++ T + ++ +W D +L W E+G
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYG 98
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 41.1 bits (92), Expect = 1e-05
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +3
Query: 291 GAAALGWCPRERLWRPDVVLLNAAATTAGDYAL----RARVSNSGSVSWIKRXDXXTPXS 458
G + + P E +W PD+VL N A G+Y + +A + +G VSW +
Sbjct: 103 GGVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKYTGDVSWKPPAIYKSSCE 159
Query: 459 MXLDNXPNDMQTCTCKFG 512
+ ++ P D Q+C KFG
Sbjct: 160 INVEYFPFDEQSCIMKFG 177
Score = 23.4 bits (48), Expect = 2.8
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +2
Query: 242 LQMNWIDKRLSWNAGEWG 295
++ W D +L WN E+G
Sbjct: 86 VEQRWNDYKLKWNPEEYG 103
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 39.5 bits (88), Expect = 4e-05
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +3
Query: 309 WCPRERLWRPDVVLLNAAATTAGDYAL-RARVSNSGSVSWIKRXDXXTPXSMXLDNXPND 485
+ P E +W PD+VL N A G + +A + +G V W + + + P D
Sbjct: 96 YVPSEHIWLPDIVLYNNADGEYGVTTMTKAILHYTGKVLWTPPAIFKSSCEIDVRYFPFD 155
Query: 486 MQTCTCKFG 512
QTC KFG
Sbjct: 156 QQTCFMKFG 164
Score = 25.4 bits (53), Expect = 0.70
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +2
Query: 155 NSKIVVNLTLHLRHA---NIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL 310
N +VV L L L N+++ T + L+ W D + W+ E+G T L
Sbjct: 43 NDTVVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTEL 95
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 39.1 bits (87), Expect = 5e-05
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 315 PRERLWRPDVVLLNAA-ATTAGDYALRARVSNSGSVSWIKRXDXXTPXSMXLDNXPNDMQ 491
P RLW+PDV++ N+A G Y V N+G+ ++ + + + P D Q
Sbjct: 101 PPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTCLYVPPGIFKSTCKIDITWFPFDDQ 160
Query: 492 TCTCKFG 512
C KFG
Sbjct: 161 RCEMKFG 167
Score = 23.0 bits (47), Expect = 3.7
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +2
Query: 242 LQMNWIDKRLSWNAGEWG 295
L++ W D + WN ++G
Sbjct: 76 LKLEWNDVNMRWNVSDYG 93
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +3
Query: 315 PRERLWRPDVVLLNAAATTAGDYALRAR--VSNSGSVSWIKRXDXXTPXSMXLDNXPNDM 488
P R+WRPD +L N A + VS++G V W+ + + ++ P D
Sbjct: 83 PYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDIDVEFFPFDE 142
Query: 489 QTCTCKF 509
Q C K+
Sbjct: 143 QRCVLKW 149
Score = 23.8 bits (49), Expect = 2.1
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +2
Query: 164 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW 292
+V L+LH ++ E + + W D L WNA E+
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEF 74
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 37.1 bits (82), Expect = 2e-04
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +3
Query: 315 PRERLWRPDVVLLNAAATTAGDYAL----RARVSNSGSVSWIKRXDXXTPXSMXLDNXPN 482
P E +W PD+VL N A G+Y + +A + ++G V W + + ++ P
Sbjct: 98 PSEHIWLPDIVLYNNA---DGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEIDVEYFPF 154
Query: 483 DMQTCTCKFG 512
D QTC KFG
Sbjct: 155 DEQTCFMKFG 164
Score = 23.8 bits (49), Expect = 2.1
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 131 RTIGSLPPNSKIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG 295
R +G+ + + L L L N++ T + ++ W D +L WN ++G
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKWNPDDYG 90
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 35.1 bits (77), Expect = 9e-04
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 324 RLWRPDVVLLNAA-ATTAGDYALRARVSNSGSVSWIKRXDXXTPXSMXLDNXPNDMQTCT 500
+LW+PD+++ N+A G Y V++ GS ++ + M + P D Q C
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDDQHCD 126
Query: 501 CKFG 512
KFG
Sbjct: 127 MKFG 130
Score = 28.3 bits (60), Expect = 0.099
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 200 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 295
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 34.7 bits (76), Expect = 0.001
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 324 RLWRPDVVLLNAA-ATTAGDYALRARVSNSGSVSWIKRXDXXTPXSMXLDNXPNDMQTCT 500
+LW+PD+++ N+A G Y V++ GS ++ + M + P D Q C
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFDDQHCD 126
Query: 501 CKFG 512
KFG
Sbjct: 127 MKFG 130
Score = 28.3 bits (60), Expect = 0.099
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 200 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 295
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 34.7 bits (76), Expect = 0.001
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 324 RLWRPDVVLLNAA-ATTAGDYALRARVSNSGSVSWIKRXDXXTPXSMXLDNXPNDMQTCT 500
+LW+PD+++ N+A G Y V+++GS ++ + + + P D Q C
Sbjct: 135 KLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCD 194
Query: 501 CKFG 512
KFG
Sbjct: 195 MKFG 198
Score = 28.3 bits (60), Expect = 0.099
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 200 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 295
++ E + A L++ W+D L WN E+G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 34.7 bits (76), Expect = 0.001
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 324 RLWRPDVVLLNAA-ATTAGDYALRARVSNSGSVSWIKRXDXXTPXSMXLDNXPNDMQTCT 500
+LW+PD+++ N+A G Y V+++GS ++ + + + P D Q C
Sbjct: 135 KLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCD 194
Query: 501 CKFG 512
KFG
Sbjct: 195 MKFG 198
Score = 28.3 bits (60), Expect = 0.099
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 200 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 295
++ E + A L++ W+D L WN E+G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 34.3 bits (75), Expect = 0.002
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 324 RLWRPDVVLLNAA-ATTAGDYALRARVSNSGSVSWIKRXDXXTPXSMXLDNXPNDMQTCT 500
+LW+PD+++ N+A G Y V+++GS ++ + + + P D Q C
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCD 126
Query: 501 CKFG 512
KFG
Sbjct: 127 MKFG 130
Score = 28.3 bits (60), Expect = 0.099
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 200 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 295
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 33.9 bits (74), Expect = 0.002
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 324 RLWRPDVVLLNAA-ATTAGDYALRARVSNSGSVSWIKRXDXXTPXSMXLDNXPNDMQTCT 500
+LW+PD+++ N+A G Y V++ GS ++ + + + P D Q C
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFPFDDQHCD 126
Query: 501 CKFG 512
KFG
Sbjct: 127 MKFG 130
Score = 28.3 bits (60), Expect = 0.099
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 200 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 295
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 33.5 bits (73), Expect = 0.003
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 324 RLWRPDVVLLNAA-ATTAGDYALRARVSNSGSVSWIKRXDXXTPXSMXLDNXPNDMQTCT 500
+LW+PD+++ N+A G Y V++ GS ++ + + + P D Q C
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKIDIAWFPFDDQHCD 126
Query: 501 CKFG 512
KFG
Sbjct: 127 MKFG 130
Score = 28.3 bits (60), Expect = 0.099
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 200 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 295
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 33.5 bits (73), Expect = 0.003
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 324 RLWRPDVVLLNAA-ATTAGDYALRARVSNSGSVSWIKRXDXXTPXSMXLDNXPNDMQTCT 500
+LW+PD+++ N+A G Y V++ GS ++ + + + P D Q C
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDDQHCD 126
Query: 501 CKFG 512
KFG
Sbjct: 127 MKFG 130
Score = 28.3 bits (60), Expect = 0.099
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 200 NIRESESTVRILADLQMNWIDKRLSWNAGEWG 295
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 33.5 bits (73), Expect = 0.003
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Frame = +3
Query: 321 ERLWRPDVVLLNAAATTAGDYALR---ARVSNSGSVSWIKRXDXXTPXSMXLDNXPNDMQ 491
ER+WRPD N + + R+S G + + R M L N P D Q
Sbjct: 115 ERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMRLTIKAKCPMELRNFPMDRQ 174
Query: 492 TCTCKFG 512
+C G
Sbjct: 175 SCPLILG 181
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.005
Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Frame = +3
Query: 285 GNGAAALGWCPRERLWRPDVVLLNAAAT---TAGDYALRARVSNSGSVSWIKRXDXXTPX 455
G AL R+W+PD N + T R+ G V + R
Sbjct: 71 GKETLALSISMLARIWKPDTYFYNGKHSYLHTITSPNKFVRLYQDGRVLYSSRLTIKAGC 130
Query: 456 SMXLDNXPNDMQTCTCKFG 512
M L+N P D Q C +FG
Sbjct: 131 PMNLENFPMDTQRCPLQFG 149
Score = 22.6 bits (46), Expect = 4.9
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +2
Query: 203 IRESESTVRILADLQMNWIDKRLSWNAGE 289
I E + T + + +W+D+RL++ G+
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGK 72
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 31.5 bits (68), Expect = 0.011
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Frame = +3
Query: 321 ERLWRPDVVLLNAAATTAGDYALR---ARVSNSGSVSWIKRXDXXTPXSMXLDNXPNDMQ 491
E++W PD N + D R R+S GSV++ R M L P D Q
Sbjct: 114 EKIWVPDTFFANDKNSFLHDVTERNKLVRLSGDGSVTYGMRFTTTLACMMDLHYYPLDSQ 173
Query: 492 TCT 500
CT
Sbjct: 174 NCT 176
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 28.3 bits (60), Expect = 0.099
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 170 VNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW 292
++ L ++H N+ E TV L++ W L+W + E+
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEF 102
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 27.5 bits (58), Expect = 0.17
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Frame = +3
Query: 327 LWRPDVVLLNAAATT---AGDYALRARVSNSGSVSWIKRXDXXTPXSMXLDNXPNDMQTC 497
+W PD+ + N+ T G V +SGSVS + + + P D C
Sbjct: 124 IWVPDISVYNSGDMTFDQTGIPPTTCLVFSSGSVSCVPSVKHVAKCATDFSSWPYDTHRC 183
Query: 498 TCKFG 512
FG
Sbjct: 184 RINFG 188
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 26.2 bits (55), Expect = 0.40
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Frame = +3
Query: 321 ERLWRPDVVLLNAA------ATTAGDYALRARVSNSGSVSWIKRXDXXTPXSMXLDNXPN 482
+ +W PD +N ATT+ ++ R+ +SGS++ R M L P
Sbjct: 91 KNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHHSGSITRSIRLTITASCPMNLQYFPM 147
Query: 483 DMQTC 497
D Q C
Sbjct: 148 DRQLC 152
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 26.2 bits (55), Expect = 0.40
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Frame = +3
Query: 321 ERLWRPDVVLLNAA------ATTAGDYALRARVSNSGSVSWIKRXDXXTPXSMXLDNXPN 482
+ +W PD +N ATT+ ++ R+ +SGS++ R M L P
Sbjct: 91 KNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHHSGSITRSIRLTITASCPMNLQYFPM 147
Query: 483 DMQTC 497
D Q C
Sbjct: 148 DRQLC 152
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 26.2 bits (55), Expect = 0.40
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Frame = +3
Query: 321 ERLWRPDVVLLNAA------ATTAGDYALRARVSNSGSVSWIKRXDXXTPXSMXLDNXPN 482
+ +W PD +N ATT+ ++ R+ +SGS++ R M L P
Sbjct: 30 KNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHHSGSITRSIRLTITASCPMNLQYFPM 86
Query: 483 DMQTC 497
D Q C
Sbjct: 87 DRQLC 91
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 23.0 bits (47), Expect = 3.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 105 GQ*CCVFAFCRTSYSTSEEKPVTRII 28
G+ CC F T Y + K VT+ I
Sbjct: 602 GEQCCWHCFNCTQYQIRDHKDVTQCI 627
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 22.2 bits (45), Expect = 6.5
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Frame = +3
Query: 321 ERLWRPDVVLLNAAATTAGDYALRARVSN-----SGSVSWIKRXDXXTPXSMXLDNXPND 485
+ LW+PD LNA + AL + S+ + +V + R M P D
Sbjct: 69 DSLWQPDPYFLNAKVSEIA--ALNHKFSSVTLYRNKTVKYSARMHAIIACQMEFQLYPMD 126
Query: 486 MQTC 497
+Q C
Sbjct: 127 IQIC 130
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.8 bits (44), Expect = 8.6
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +3
Query: 288 NGAAALGWCPRERLWRPDVVLLNAAATTAGDYALRARVSNSGSV 419
NG A+ C +PD++ + A + GD +V +G++
Sbjct: 17 NGTGAVVECQARGNPQPDIIWVRADGSAVGDVPGLRQVLPNGNL 60
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 307 PSAAAPFPCVPTQS 266
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,380
Number of Sequences: 438
Number of extensions: 3764
Number of successful extensions: 79
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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