Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_N13
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.92 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.7  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 210  RPLPXYYSACISTIYPGLRRPIWRSSPMTPP 302
            RPL  +  + I + Y  L R  WR     PP
Sbjct: 1328 RPLSEHIYSSIDSDYSTLERTAWRQQQPPPP 1358


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +2

Query: 107 SSSYETTCRTVRSDIESRERVPGPVTSQPESRKAPPSPRLLFSLYINDIPR 259
           +++Y   C+ +  +I + E++P PV         PP P   +      IPR
Sbjct: 344 NNNYNNNCKKLYYNIINIEQIPVPVPVPIYCGNFPPRPMGPWISIQEQIPR 394


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +2

Query: 326 ALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLS 463
           A LH  +         W +  +I++NP+ +  V  KR   P+  ++
Sbjct: 825 ATLHCEVHGDTPVTVTWLKGGKIELNPSTNYRVTVKREVTPDGVIA 870


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +2

Query: 326 ALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLS 463
           A LH  +         W +  +I++NP+ +  V  KR   P+  ++
Sbjct: 821 ATLHCEVHGDTPVTVTWLKGGKIELNPSTNYRVTVKREVTPDGVIA 866


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 121 DYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPXTIQ 234
           D+L+N +          +P+HV  G PQ   L+  T Q
Sbjct: 87  DWLANANSPVGSPSAALQPQHVVYGNPQQQQLAAETQQ 124


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 240 ISTIYPGLRRPIWR 281
           + T+YPG+R P +R
Sbjct: 108 LGTLYPGMRAPSFR 121


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 170 PGPVTSQPESRKAPPSPRLL 229
           PG V   PE++  PPS  L+
Sbjct: 287 PGEVDLPPETQPTPPSATLV 306


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 240 ISTIYPGLRRPIWR 281
           + T+YPG+R P +R
Sbjct: 108 LGTLYPGMRAPSFR 121


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 16/54 (29%), Positives = 21/54 (38%)
 Frame = +3

Query: 141 VPISSRGNAFPAPSRHSRSPARLRPLPXYYSACISTIYPGLRRPIWRSSPMTPP 302
           VP ++   A P        P    P+P       STI   +R  +  S PM PP
Sbjct: 773 VPQNTNSQAIPRIPILPMIPVYCVPVPQVND---STILSPVREKLSSSQPMQPP 823


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 271,623
Number of Sequences: 438
Number of extensions: 6994
Number of successful extensions: 25
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)