Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_N04
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    87   3e-18
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   3.5  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    27   4.6  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    27   4.6  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    26   6.0  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    26   6.0  

>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 87.0 bits (206), Expect = 3e-18
 Identities = 62/172 (36%), Positives = 86/172 (50%), Gaps = 6/172 (3%)
 Frame = +2

Query: 179 MCGIWATFGVTGGLT---PTCVKCFSNIRHRGPDAWRIEQDAREPLAILGFQRLAIVDGR 349
           MCGI A   V   +    P  +     +RHRGPD W     A     IL  +RLAIV   
Sbjct: 1   MCGILAVHHVAEDIEAFKPKALHLSKQLRHRGPD-W--SGKAIRNQTILCHERLAIVGVE 57

Query: 350 HGMQPMRLHCYPRTTLICNGEIYNCKRLQK--QHEFQYETNRDVEAIIHLYQRFGIEEAV 523
            G QP+ +    +  L  NGEIYN  +L++  +  ++++T  D E I++LY+  G     
Sbjct: 58  SGAQPL-VSDDGKLVLTVNGEIYNHLKLRENLKGNYKFKTYSDCEVILYLYREHG-PACA 115

Query: 524 TNLDGVFSFCLVDGEKNKVYIARDPYGVRPLF-SFHDPENDVLAICSEAKGL 676
             LDG+FS+ L D +K+KV  ARDP G+  L+  F     D     SE K L
Sbjct: 116 NMLDGMFSWVLYDQDKDKVVAARDPIGITTLYQGFSSDSPDTAYFASELKAL 167


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 340 HDSETLKSENSQRLSSILLNSPRVRT 263
           HD+E  K  N  R +S L+ +PRV T
Sbjct: 745 HDNEVKKENNRIRNASSLMENPRVST 770


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 571 LLTVDKAKRKNPVKVSDGFFYAESLIQMYD 482
           +L  DK   ++  +   GFFY   L+Q Y+
Sbjct: 162 ILYADKESYRHMCRFESGFFYRHPLVQKYE 191


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +2

Query: 428 RLQKQHEFQYETNRDVEAIIHLYQRFGIEEAVTNLDGVFSFCLVDGEKNK-VYIARD 595
           R  +   F Y    D +A+  +Y++FGI+EA+   +  F    V+G   K +YI+ D
Sbjct: 459 RFHELDPFVY-IKEDDQALEKIYKKFGIDEAIIKKNQFF-VRNVNGVPTKAIYISND 513


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 686 KQNGSPNSTLGQFSPGNLQ 742
           KQNG PNS LG F  G ++
Sbjct: 71  KQNGFPNSQLGSFDWGMIK 89


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +2

Query: 410 EIYNCKRLQKQHEFQYETNRDVEAIIHLYQRFGIEEAVTNLDGVFSFCLVDGEKNKV 580
           E   C   Q  H F  E  R+ +  +   Q+  I++     +  + +C++DG K KV
Sbjct: 275 EFSKCDFTQMFHHF--EQKREEKKSMPKEQKKAIKQKKDEEEEKYKWCILDGRKEKV 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,580,264
Number of Sequences: 5004
Number of extensions: 74408
Number of successful extensions: 184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)