Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_N02
(885 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.38
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 30 0.38
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.67
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.0
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 2.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.0
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace... 27 3.6
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.7
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo... 27 4.7
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|... 26 6.2
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 6.2
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.3 bits (65), Expect = 0.38
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 719 PPPXPPPXXXPXRPPRGXPPP 781
PPP PPP P P PPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +1
Query: 721 PPGPPPXXXAPXSPAGXPPPXXXPXPXRXAXXPRRXPXXP 840
PPG PP P P G PP P P +R P
Sbjct: 5 PPGNPPP---PPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 719 PPPXPPPXXXPXRPPRGXPPPXXXP 793
PPP PPP P P PPP P
Sbjct: 9 PPPPPPP---PGFEPPSQPPPPPPP 30
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 30.3 bits (65), Expect = 0.38
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 235 VRVHRANTGRSSNELDRQTTELERR 309
+R H+ + GR+ ELDR+ T+L++R
Sbjct: 18 LRAHQRSLGRAERELDRERTKLDQR 42
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 0.67
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = +2
Query: 641 PAGAXPLPVAXXXXXPWXGXEXXXXGPPPXPPPXXXPXRPPRGXPPP 781
P A +P P GPPP PPP P PPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 29.5 bits (63), Expect = 0.67
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 719 PPPXPPPXXXPXRPPRGXPPP 781
PPP PPP PP PPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +1
Query: 718 TPPGPPPXXXAPXSPAGXPPPXXXPXPXRXAXXPRRXP 831
+PP PPP P +PA P P P P P P
Sbjct: 731 SPPPPPPAVIVP-TPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +2
Query: 641 PAGAXPLPVAXXXXXPWXGXEXXXXGPPPXPPPXXXPXRPPRGXPPP 781
PA P P P PPP PP PP PPP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Frame = +1
Query: 724 PGPPPXXXAPXSP-AGXPPPXXXPXPXRXAXXPRRXPXXP 840
P P P P +P G PPP P A P P P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +1
Query: 727 GPPPXXXAPXSPAGXPPPXXXPXPXRXAXXPRRXPXXP 840
GPPP P PPP P P A R P
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/57 (28%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Frame = +2
Query: 662 PVAXXXXXPWXGXEXXXXGPPPXPPPXXXPX---RPPRGXPPPXXXPXPXAXXXXPA 823
PV+ P P P PPP P PP PP P P P+
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Frame = +1
Query: 718 TPPGPP----PXXXAPXSPAGXPPPXXXPXPXRXA 810
TPP PP P AP PAG P P P A
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSA 1740
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/47 (31%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Frame = +1
Query: 718 TPPGPPPXXXAPX--SPAGXPPPXXXPXPXRXAXXPRRXPXXPXXXL 852
TPP P P +P PPP P P P P P L
Sbjct: 1689 TPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = -2
Query: 839 GXXGXLRGXXAXRXGXGXXXGGGXPAGDXGAXXXGGGPGG 720
G G G R G G GG G GA GG GG
Sbjct: 13 GSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGG 52
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -1
Query: 834 PRXSAGXXXXAXGXGXXXGGGXPRGGRXGXXXGGGXGG 721
P G G G GG GG G GGG GG
Sbjct: 5 PGSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGG 42
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/41 (31%), Positives = 14/41 (34%)
Frame = +1
Query: 718 TPPGPPPXXXAPXSPAGXPPPXXXPXPXRXAXXPRRXPXXP 840
TPP P P P +P PP P P P P
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP 454
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +1
Query: 721 PPGPPPXXXAPXSPAGXPPPXXXPXPXRXAXXPRRXP 831
PP PP AP PAG P P P A P P
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLP-PAAPAPPPAPAP 482
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/40 (32%), Positives = 13/40 (32%)
Frame = +1
Query: 721 PPGPPPXXXAPXSPAGXPPPXXXPXPXRXAXXPRRXPXXP 840
PP PPP SP PP P A P P
Sbjct: 254 PPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLP 293
Score = 26.6 bits (56), Expect = 4.7
Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 14/69 (20%)
Frame = +2
Query: 614 PXGXGXXLSPAGAXPLPVAXXXXXPWXGXEXXXXGPPP--------------XPPPXXXP 751
P G SP + P P+A P PPP PPP P
Sbjct: 258 PPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPP 317
Query: 752 XRPPRGXPP 778
R RG PP
Sbjct: 318 SRRNRGKPP 326
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Frame = +2
Query: 719 PPPXPPPXXXPXRPPRG-------XPPPXXXPXPXAXXXXPAXXRG 835
PPP PP +PP G PPP P A P +G
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG 357
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +2
Query: 719 PPPXPPPXXXPXRPPRGXPPPXXXP 793
PPP PPP P PP P
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRPIAP 277
>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
N-acetylglucosaminyltransferase Alg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 159 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 61
Y ES + D+ + SH+ A +I Q R+G +
Sbjct: 63 YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = -2
Query: 839 GXXGXLRGXXAXRXGXGXXXGGGXPAGDXGAXXXGGGPGG 720
G G G G G GGG + G GGGPGG
Sbjct: 208 GGFGGFGGEGHHHGGHGGF-GGGPGGFEGGPGGFGGGPGG 246
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = -2
Query: 839 GXXGXLRGXXAXRXGXGXXXGGGXPAGDXGAXXXGGGPGG 720
G G G G GGG G GGGPGG
Sbjct: 228 GGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = -2
Query: 839 GXXGXLRGXXAXRXGXGXXXGGGXPAGDXGAXXXGGGPGG 720
G G G G GGG G GGGPGG
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGG 260
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 3.6
Identities = 21/68 (30%), Positives = 23/68 (33%)
Frame = +1
Query: 628 PGPVPXGCKXTXRGXXXXXXLXXXRXAXXGTPPGPPPXXXAPXSPAGXPPPXXXPXPXRX 807
P PVP G + + A G PP P P AP PA P P P
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPVP----APSGAPPVPKPSVAAPPVPA--PSSGIPPVPKPA 1185
Query: 808 AXXPRRXP 831
A P P
Sbjct: 1186 AGVPPVPP 1193
Score = 27.1 bits (57), Expect = 3.6
Identities = 23/75 (30%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Frame = +2
Query: 638 SPAGAXPLP----VAXXXXXPWXGXEXXXX---GPPPXPPPXXXP--XRPPRGXPPPXXX 790
+P+GA P+P A P G G PP PPP P +P G PP
Sbjct: 1154 APSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP---V 1210
Query: 791 PXPXAXXXXPAXXRG 835
P P P G
Sbjct: 1211 PPPSTAPPVPTPSAG 1225
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/44 (31%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Frame = +2
Query: 695 GXEXXXXGPP--PXPPPXXXPXRPPRGXPPPXXXPXPXAXXXXP 820
G PP P PP RPP PP P P P
Sbjct: 116 GKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPP 159
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +1
Query: 730 PPPXXXAPXSPAGXPP-PXXXPXPXRXAXXPRRXPXXP 840
PP AP P+ PP P P P + A + P P
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP 188
>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = -1
Query: 186 LESGGESRSYVARSESIMRDSD----VAFSHSAALAIAQVRRNGNKNNISRRHFMTTDLL 19
+E G E +A++E + D + ++ V ++ N +R F TDL
Sbjct: 261 IEGGAERHDLLAKTEQDINPQDGDEKINAKSPTTNSVTDVAKDQTVTNPKKRKFEVTDLA 320
Query: 18 KLSRP 4
+ SRP
Sbjct: 321 RGSRP 325
>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 684
Score = 26.2 bits (55), Expect = 6.2
Identities = 19/74 (25%), Positives = 36/74 (48%)
Frame = +2
Query: 236 SESTVRIQADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALR 415
S +++R A + + + +L N G+W TW + R W DV + ++ + + LR
Sbjct: 160 SPASLRETAAKEYDALTSKLG-NTGDWIYDTWSDNELRTWLHDVGVPISSHESTRSHLLR 218
Query: 416 ARVSNNGSVSWDKA 457
++ N S D+A
Sbjct: 219 -KLKNYISTKADEA 231
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Frame = -1
Query: 819 GXXXXAXGXGXXXG-GGXPRGGRXGXXXGGGXGG 721
G G G G GG RGG G GG GG
Sbjct: 156 GNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,556
Number of Sequences: 5004
Number of extensions: 51469
Number of successful extensions: 320
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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