Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_N02
(885 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 52 9e-09
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 48 1e-07
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 48 2e-07
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 48 2e-07
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 47 2e-07
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 47 2e-07
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 46 4e-07
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 46 5e-07
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 45 8e-07
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 45 8e-07
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 45 8e-07
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 45 8e-07
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 45 8e-07
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 45 1e-06
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 44 1e-06
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 44 2e-06
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 44 2e-06
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 43 3e-06
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 42 8e-06
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 39 7e-05
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 35 0.001
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 34 0.002
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 30 0.033
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 23 4.9
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 51.6 bits (118), Expect = 9e-09
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Frame = +2
Query: 89 IASAAECENATSLSLMIDSLLATYDRDSPPDSK----IVVNLTLHLRHA---NIRESEST 247
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 248 VRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL-RAR 421
+ L+ W D + W+ E+G T L V SE +W PD+VL N A G + +A
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAI 126
Query: 422 VSNNGSVSW 448
+ G V W
Sbjct: 127 LHYTGKVLW 135
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 48.0 bits (109), Expect = 1e-07
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +2
Query: 107 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 271
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 272 MNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL 373
+ W L+W + E+ ++ V S +W PD+V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 47.6 bits (108), Expect = 2e-07
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 224 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 397
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 398 GDYALRARVSNNGS 439
G Y V++NGS
Sbjct: 153 GTYQTNVVVTHNGS 166
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 47.6 bits (108), Expect = 2e-07
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 224 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 397
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 398 GDYALRARVSNNGS 439
G Y V++NGS
Sbjct: 153 GTYQTNVVVTHNGS 166
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 47.2 bits (107), Expect = 2e-07
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 224 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 397
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 398 GDYALRARVSNNGS 439
G Y V++NGS
Sbjct: 85 GTYQTSVVVTHNGS 98
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 47.2 bits (107), Expect = 2e-07
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Frame = +2
Query: 107 CENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIQAD 265
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 266 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGS 439
++ +W D +L W+ E+G L V S+ +WRPD+VL NA A +A ++ G
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 136
Query: 440 VSW 448
V W
Sbjct: 137 VEW 139
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 46.4 bits (105), Expect = 4e-07
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 12/135 (8%)
Frame = +2
Query: 80 TCAIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRH---ANIRES 238
+C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 6 SCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 65
Query: 239 ESTVRIQADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAGDYAL- 412
T + ++ W D +L WN ++G T V SE +W PD+VL N A G+Y +
Sbjct: 66 IMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA---DGNYEVT 120
Query: 413 ---RARVSNNGSVSW 448
+A + + G V W
Sbjct: 121 IMTKAILHHTGKVVW 135
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 46.0 bits (104), Expect = 5e-07
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Frame = +2
Query: 134 MIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIQADLQMNWIDKR 292
+ D LL+ Y+R P LT+ L N++ T + ++ W D +
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVW--VEQRWNDYK 94
Query: 293 LSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 448
L WN E+G L V SE +W PD+VL N A G+Y + +A + G VSW
Sbjct: 95 LKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKYTGDVSW 148
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 45.2 bits (102), Expect = 8e-07
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 224 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 397
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 398 GDYALRARVSNNGS 439
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 45.2 bits (102), Expect = 8e-07
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 224 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 397
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 398 GDYALRARVSNNGS 439
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 45.2 bits (102), Expect = 8e-07
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 224 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 397
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 398 GDYALRARVSNNGS 439
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 45.2 bits (102), Expect = 8e-07
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 224 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 397
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 398 GDYALRARVSNNGS 439
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 45.2 bits (102), Expect = 8e-07
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 224 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 397
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 398 GDYALRARVSNNGS 439
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 44.8 bits (101), Expect = 1e-06
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Frame = +2
Query: 134 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVRIQAD---LQMNWIDKRLS 298
+ D LL+ Y++ P ++ V+ + + L+ + + + +I ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 299 WNAGEWGCSTWL-VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 448
W E+G L V S+ +WRPD+VL NA A +A + + G V W
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEW 143
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 44.4 bits (100), Expect = 1e-06
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Frame = +2
Query: 113 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 280
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 281 IDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 379
+D+RL++ G+ + + R+W+PD N
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 44.0 bits (99), Expect = 2e-06
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Frame = +2
Query: 188 IVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 364
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 365 VVLLNAAATTAGDYALRAR--VSNNGSVSW 448
+L N A + VS+ G V W
Sbjct: 92 TILYNNADPQYSSAVINTNVIVSHTGEVVW 121
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 44.0 bits (99), Expect = 2e-06
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Frame = +2
Query: 86 AIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTV 250
A+A++ + +++ LL TY+ P +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 251 RIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARV 424
L++ W D + WN ++G L + RLW+PDV++ N+A G Y V
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVV 130
Query: 425 SNNGS 439
NNG+
Sbjct: 131 KNNGT 135
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 43.2 bits (97), Expect = 3e-06
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Frame = +2
Query: 185 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWR 358
K+ VN L ++ N+ E ++ L+ W D +L W+ ++ G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 359 PDVVLLNAAATTAGDYALRAR----VSNNGSVSW 448
PD+VL N A G+Y +R + + NG V W
Sbjct: 111 PDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLW 141
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 41.9 bits (94), Expect = 8e-06
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 10/115 (8%)
Frame = +2
Query: 134 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVRIQAD---LQMNWIDKRLS 298
+ D LL+ Y++ P ++ V+ + + L+ + + + +I ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 299 WNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 448
W E+G L V S+ +WRPD+VL N A G+Y + +A V +G V W
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA---DGNYEVTLMTKATVYYSGLVVW 143
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 38.7 bits (86), Expect = 7e-05
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Frame = +2
Query: 110 ENATSLSLMIDSLLATYDRDSPPDS--KIVVNLTLHL--RHANIRESESTVRIQADLQMN 277
++ T+L + L YD + P S +I N+T+ L + + S + + + + +
Sbjct: 39 DHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLMEFDDWTSVMELHSWMTLM 98
Query: 278 WIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAAATT---AGDYALRARVSNNGSVS 445
W D LSW ++ G + V S+ +W PD+ + N+ T G V ++GSVS
Sbjct: 99 WTDSHLSWKPSDFDGINYIYVKSDDIWVPDISVYNSGDMTFDQTGIPPTTCLVFSSGSVS 158
Query: 446 WDKALGH 466
++ H
Sbjct: 159 CVPSVKH 165
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 34.7 bits (76), Expect = 0.001
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Frame = +2
Query: 134 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 292
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 293 LSWN--AGEWGCSTWLVSSERLWRPDVVLLN 379
L +N G T L + R+W PD+ N
Sbjct: 95 LRFNDFGGRLKYLT-LTDASRVWMPDLFFSN 124
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 34.3 bits (75), Expect = 0.002
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Frame = +2
Query: 122 SLSLMIDSLLATYDRDSPPD----SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNWID 286
++++++++LL Y+ + P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 287 KRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 379
RLS+ S + ER+WRPD N
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 29.9 bits (64), Expect = 0.033
Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Frame = +2
Query: 719 PPPXPPPXXXPXRPPRGXPP-PXXXPXPXAXXXXP 820
P P P P P P RG PP P P P P
Sbjct: 21 PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55
Score = 24.2 bits (50), Expect = 1.6
Identities = 12/45 (26%), Positives = 13/45 (28%)
Frame = +2
Query: 641 PAGAXPLPVAXXXXXPWXGXEXXXXGPPPXPPPXXXPXRPPRGXP 775
P+ P P P P PPP P PP P
Sbjct: 16 PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 22.6 bits (46), Expect = 4.9
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Frame = +2
Query: 188 IVVNLTLHLRHAN-IRESESTVRIQADLQMNWIDKRLS-----WNAGEWGCSTWLVSSER 349
++V+ + + N I + R+ ++ +WI+ RL + G+ + +
Sbjct: 11 VLVDFNIFVADINSINVEDMDFRVDMFVRQSWIESRLDMPDYIFEEGDDYVTLPPEFFDS 70
Query: 350 LWRPDVVLLNA 382
LW+PD LNA
Sbjct: 71 LWQPDPYFLNA 81
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,168
Number of Sequences: 438
Number of extensions: 5408
Number of successful extensions: 65
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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