Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_M15
(892 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 60 3e-11
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 57 2e-10
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 56 6e-10
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 55 1e-09
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 54 1e-09
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 52 5e-09
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 52 9e-09
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 52 9e-09
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 51 2e-08
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 51 2e-08
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 49 7e-08
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 49 7e-08
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 49 7e-08
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 49 7e-08
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 49 7e-08
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 48 9e-08
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 48 2e-07
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 46 5e-07
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 45 8e-07
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 44 1e-06
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 37 3e-04
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 33 0.005
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 31 0.011
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 22 8.6
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 8.6
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 60.1 bits (139), Expect = 3e-11
Identities = 51/160 (31%), Positives = 70/160 (43%), Gaps = 9/160 (5%)
Frame = +2
Query: 95 IASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA---NIRESEST 253
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 254 VRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL-RAR 427
+ L+ W D + W+ E+G T L V SE +W PD+VL N A G + +A
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAI 126
Query: 428 VSNNGSVSWDKALGH*HSNFYAVXQXGPXDMQTCPFKFGS 547
+ G V W S+ + P D QTC KFGS
Sbjct: 127 LHYTGKVLWTPPAIF-KSSCEIDVRYFPFDQQTCFMKFGS 165
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 57.2 bits (132), Expect = 2e-10
Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 9/154 (5%)
Frame = +2
Query: 113 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRILAD 271
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 272 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGS 445
++ +W D +L W+ E+G L V S+ +WRPD+VL NA A +A ++ G
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 136
Query: 446 VSWDKALGH*HSNFYAVXQXGPXDMQTCPFKFGS 547
V W K S+ + P D QTC KFGS
Sbjct: 137 VEW-KPPAIYKSSCEIDVEYFPFDEQTCVMKFGS 169
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 55.6 bits (128), Expect = 6e-10
Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 7/143 (4%)
Frame = +2
Query: 140 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 304
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 305 WNAGEWGCSTWL-VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSWDKALGH*H 478
W E+G L V S+ +WRPD+VL NA A +A + + G V W K
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEW-KPPAIYK 150
Query: 479 SNFYAVXQXGPXDMQTCPFKFGS 547
S+ + P D QTC KFGS
Sbjct: 151 SSCEIDVEYFPFDEQTCVLKFGS 173
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 54.8 bits (126), Expect = 1e-09
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 13/167 (7%)
Frame = +2
Query: 86 TCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHLRH---ANIRES 244
+C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 6 SCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 65
Query: 245 ESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAGDYAL- 418
T + ++ W D +L WN ++G T V SE +W PD+VL N A G+Y +
Sbjct: 66 IMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA---DGNYEVT 120
Query: 419 ---RARVSNNGSVSWDKALGH*HSNFYAV-XQXGPXDMQTCPFKFGS 547
+A + + G V W + +F + + P D QTC KFGS
Sbjct: 121 IMTKAILHHTGKVVWKPPA--IYKSFCEIDVEYFPFDEQTCFMKFGS 165
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 54.4 bits (125), Expect = 1e-09
Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 10/146 (6%)
Frame = +2
Query: 140 MIDSLLATYDRESPPDSKIVVNLT--LHLRHANIRESESTVRILAD---LQMNWIDKRLS 304
+ D LL+ Y+R P LT L L+ + + E +++ ++ W D +L
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 305 WNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSWDKALG 469
WN E+G L V SE +W PD+VL N A G+Y + +A + G VSW K
Sbjct: 97 WNPEEYGGVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKYTGDVSW-KPPA 152
Query: 470 H*HSNFYAVXQXGPXDMQTCPFKFGS 547
S+ + P D Q+C KFGS
Sbjct: 153 IYKSSCEINVEYFPFDEQSCIMKFGS 178
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 52.4 bits (120), Expect = 5e-09
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 10/146 (6%)
Frame = +2
Query: 140 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 304
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 305 WNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSWDKALG 469
W E+G L V S+ +WRPD+VL N A G+Y + +A V +G V W
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA---DGNYEVTLMTKATVYYSGLVVWQPPAV 148
Query: 470 H*HSNFYAVXQXGPXDMQTCPFKFGS 547
+ S+ + P D+QTC K GS
Sbjct: 149 Y-KSSCSIDVEFFPYDVQTCVLKLGS 173
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 51.6 bits (118), Expect = 9e-09
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 7/143 (4%)
Frame = +2
Query: 140 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 304
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 305 WNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWDKALGH*H 478
WN E+ G ++ +LW+PD+++ N+A G Y V++NGS + G
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPP-GIFK 176
Query: 479 SNFYAVXQXGPXDMQTCPFKFGS 547
S P D Q C KFGS
Sbjct: 177 STCKIDITWFPFDDQHCDMKFGS 199
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 51.6 bits (118), Expect = 9e-09
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 7/143 (4%)
Frame = +2
Query: 140 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 304
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 305 WNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWDKALGH*H 478
WN E+ G ++ +LW+PD+++ N+A G Y V++NGS + G
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPP-GIFK 176
Query: 479 SNFYAVXQXGPXDMQTCPFKFGS 547
S P D Q C KFGS
Sbjct: 177 STCKIDITWFPFDDQHCDMKFGS 199
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 50.8 bits (116), Expect = 2e-08
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 403
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 404 GDYALRARVSNNGSVSWDKALGH*HSNFYAVXQXGPXDMQTCPFKFGS 547
G Y V++NGS + G S P D Q C KFGS
Sbjct: 85 GTYQTSVVVTHNGSCLYVPP-GIFKSTCKIDITWFPFDDQHCDMKFGS 131
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 50.8 bits (116), Expect = 2e-08
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Frame = +2
Query: 191 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWR 364
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 365 PDVVLLNAAATTAGDYALRAR----VSNNGSVSWDKALGH*HSNFYAVXQXGPXDMQTCP 532
PD+VL N A G+Y +R + + NG V W + S V P D QTC
Sbjct: 111 PDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLWVPPAIYQSSCTIDVTYF-PFDQQTCI 166
Query: 533 FKFGS 547
KFGS
Sbjct: 167 MKFGS 171
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 48.8 bits (111), Expect = 7e-08
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 403
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 404 GDYALRARVSNNGSVSWDKALGH*HSNFYAVXQXGPXDMQTCPFKFGS 547
G Y V+++GS + G S P D Q C KFGS
Sbjct: 85 GTYQTSVVVTHDGSCLYVPP-GIFKSTCKMDVAWFPFDDQHCDMKFGS 131
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 48.8 bits (111), Expect = 7e-08
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 403
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 404 GDYALRARVSNNGSVSWDKALGH*HSNFYAVXQXGPXDMQTCPFKFGS 547
G Y V+++GS + G S P D Q C KFGS
Sbjct: 85 GTYQTSVVVTHDGSCLYVPP-GIFKSTCKIDIAWFPFDDQHCDMKFGS 131
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 48.8 bits (111), Expect = 7e-08
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 403
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 404 GDYALRARVSNNGSVSWDKALGH*HSNFYAVXQXGPXDMQTCPFKFGS 547
G Y V+++GS + G S P D Q C KFGS
Sbjct: 85 GTYQTSVVVTHDGSCLYVPP-GIFKSTCKIDITWFPFDDQHCDMKFGS 131
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 48.8 bits (111), Expect = 7e-08
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 403
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 404 GDYALRARVSNNGSVSWDKALGH*HSNFYAVXQXGPXDMQTCPFKFGS 547
G Y V+++GS + G S P D Q C KFGS
Sbjct: 85 GTYQTSVVVTHDGSCLYVPP-GIFKSTCKMDIAWFPFDDQHCDMKFGS 131
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 48.8 bits (111), Expect = 7e-08
Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 7/159 (4%)
Frame = +2
Query: 92 AIASAAECENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHA-NIRESESTV 256
A+A++ + +++ LL TY+ E P ++ +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 257 RILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARV 430
L++ W D + WN ++G L + RLW+PDV++ N+A G Y V
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVV 130
Query: 431 SNNGSVSWDKALGH*HSNFYAVXQXGPXDMQTCPFKFGS 547
NNG+ + G S P D Q C KFGS
Sbjct: 131 KNNGTCLYVPP-GIFKSTCKIDITWFPFDDQRCEMKFGS 168
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 48.4 bits (110), Expect = 9e-08
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 403
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 404 GDYALRARVSNNGSVSWDKALGH*HSNFYAVXQXGPXDMQTCPFKFGS 547
G Y V+++GS + G S P D Q C KFGS
Sbjct: 85 GTYQTSVVVTHDGSCLYVPP-GIFGSTCKIDIAWFPFDDQHCDMKFGS 131
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 47.6 bits (108), Expect = 2e-07
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 7/150 (4%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 286
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 287 IDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAAAT---TAGDYALRARVSNNGSVSWD 457
+D+RL++ G+ + + R+W+PD N + T R+ +G V +
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYNGKHSYLHTITSPNKFVRLYQDGRVLYS 121
Query: 458 KALGH*HSNFYAVXQXGPXDMQTCPFKFGS 547
L + + P D Q CP +FGS
Sbjct: 122 SRLTI-KAGCPMNLENFPMDTQRCPLQFGS 150
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 46.0 bits (104), Expect = 5e-07
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 3/121 (2%)
Frame = +2
Query: 194 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 370
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 371 VVLLNAAATTAGDYALRAR--VSNNGSVSWDKALGH*HSNFYAVXQXGPXDMQTCPFKFG 544
+L N A + VS+ G V W + G S+ + P D Q C K+
Sbjct: 92 TILYNNADPQYSSAVINTNVIVSHTGEVVW-LSHGIFRSSCDIDVEFFPFDEQRCVLKWA 150
Query: 545 S 547
S
Sbjct: 151 S 151
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 45.2 bits (102), Expect = 8e-07
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +2
Query: 113 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 277
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 278 MNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL 379
+ W L+W + E+ ++ V S +W PD+V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 44.4 bits (100), Expect = 1e-06
Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 8/159 (5%)
Frame = +2
Query: 116 ENATSLSLMIDSLLATYDRESPPDS--KIVVNLTLHL--RHANIRESESTVRILADLQMN 283
++ T+L + L YD P S +I N+T+ L + + S + + + + +
Sbjct: 39 DHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLMEFDDWTSVMELHSWMTLM 98
Query: 284 WIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAAATT---AGDYALRARVSNNGSVS 451
W D LSW ++ G + V S+ +W PD+ + N+ T G V ++GSVS
Sbjct: 99 WTDSHLSWKPSDFDGINYIYVKSDDIWVPDISVYNSGDMTFDQTGIPPTTCLVFSSGSVS 158
Query: 452 WDKALGH*HSNFYAVXQXGPXDMQTCPFKFGSRMHXSXE 568
++ H + P D C FGS +H E
Sbjct: 159 CVPSVKH-VAKCATDFSSWPYDTHRCRINFGSWVHSGEE 196
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 36.7 bits (81), Expect = 3e-04
Identities = 32/148 (21%), Positives = 61/148 (41%), Gaps = 8/148 (5%)
Frame = +2
Query: 128 SLSLMIDSLLATYDRESPPD----SKIVVNLTLHLRHAN-IRESESTVRILADLQMNWID 292
++++++++LL Y+ P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 293 KRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYAL---RARVSNNGSVSWDKA 463
RLS+ S + ER+WRPD N + + R+S +G + +
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMR 155
Query: 464 LGH*HSNFYAVXQXGPXDMQTCPFKFGS 547
L + + P D Q+CP GS
Sbjct: 156 LTI-KAKCPMELRNFPMDRQSCPLILGS 182
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 32.7 bits (71), Expect = 0.005
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 13/124 (10%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 286
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 287 IDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNA------AATTAGDYALRARVSNN 439
D RL++ G T V SE +W PD +N ATT+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEF---IRIHHS 123
Query: 440 GSVS 451
GS++
Sbjct: 124 GSIT 127
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 31.5 bits (68), Expect = 0.011
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 13/124 (10%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 286
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 287 IDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNA------AATTAGDYALRARVSNN 439
D RL++ G T V SE +W PD +N ATT+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEF---IRIHHS 123
Query: 440 GSVS 451
GS++
Sbjct: 124 GSIT 127
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 21.8 bits (44), Expect = 8.6
Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Frame = +2
Query: 194 IVVNLTLHLRHAN-IRESESTVRILADLQMNWIDKRLS-----WNAGEWGCSTWLVSSER 355
++V+ + + N I + R+ ++ +WI+ RL + G+ + +
Sbjct: 11 VLVDFNIFVADINSINVEDMDFRVDMFVRQSWIESRLDMPDYIFEEGDDYVTLPPEFFDS 70
Query: 356 LWRPDVVLLNAAATTAGDYALRARVSN-----NGSVSWDKALGH*HSNFYAVXQXGPXDM 520
LW+PD LNA + AL + S+ N +V + + H Q P D+
Sbjct: 71 LWQPDPYFLNAKVSEIA--ALNHKFSSVTLYRNKTVKYSARM-HAIIACQMEFQLYPMDI 127
Query: 521 QTCP 532
Q CP
Sbjct: 128 QICP 131
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 337 PSAAAPFPCVPTQS 296
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,554
Number of Sequences: 438
Number of extensions: 4812
Number of successful extensions: 78
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -