Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_M12
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.065
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   5.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.065
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 458 PPPXXXXXGGGPPPPPP 508
           PPP     G GPPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780



 Score = 29.1 bits (62), Expect = 0.61
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 458 PPPXXXXXGGGPPPPPP 508
           PPP      G PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPP 781



 Score = 28.7 bits (61), Expect = 0.81
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 461 PPXXXXXGGGPPPPPP 508
           PP     GG PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPP 767



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 458 PPPXXXXXGGGPPPPPP 508
           PPP     G  PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 458 PPPXXXXXGGGPPPPPP 508
           PPP     G  PPPPPP
Sbjct: 766 PPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 4.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 458 PPPXXXXXGGGPPPPPP 508
           PPP      G  PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPP 779


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 507 GGGGGGPPPXXXXXGG 460
           GGG GGPPP     GG
Sbjct: 194 GGGSGGPPPGPGGFGG 209


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 458 PPPXXXXXGGGPPPPPP 508
           PPP        PPPPPP
Sbjct: 13  PPPPGFEPPSQPPPPPP 29



 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 458 PPPXXXXXGGGPPPPPP 508
           PPP        PPPPPP
Sbjct: 14  PPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,728,283
Number of Sequences: 5004
Number of extensions: 22617
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)