Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_M08
         (877 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0778 + 25124174-25124287,25124437-25124742                       33   0.30 
03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559     29   4.9  
03_05_1079 + 30222017-30222903,30222992-30223117,30223752-302238...    28   8.5  
03_01_0640 - 4683970-4684481,4685197-4685343,4685606-4686764,468...    28   8.5  

>01_05_0778 + 25124174-25124287,25124437-25124742
          Length = 139

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = -1

Query: 814 LPSTVRCGXQAGLPSXLFRIPXRNXAQXKRPAXPNDGAKDRXRDRTSRQXAGANRF 647
           L ST RCG   G    + ++P  + A    PA  +  A+ R   + +   A   RF
Sbjct: 61  LASTARCGGGGGTKEEILKVPQSSAATMAEPAAGDAAARSRTASQVAAGIAQGERF 116


>03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559
          Length = 789

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 293 PARALSALNALRKSRQHYDAVLVA 364
           P RA  ++N L K R+H DAV VA
Sbjct: 628 PDRATESINRLMKRREHIDAVKVA 651


>03_05_1079 +
           30222017-30222903,30222992-30223117,30223752-30223808,
           30224883-30224913,30225159-30225236,30225297-30225383
          Length = 421

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
 Frame = +1

Query: 442 PRDHITSTGFRSCVPXXXXXXXXLEGTCGIRLHRSSSGQRYA---LGPEIVSCRLEAACR 612
           PR +   +  R C          L+G CG    + S  Q +    L P+   C+ E AC 
Sbjct: 337 PRGYYKCSSVRGCPARKHVERSGLQGECGKATDKRSDRQPFVSVLLCPKSKPCKSEMACF 396

Query: 613 VGQGSP 630
           +   SP
Sbjct: 397 LVATSP 402


>03_01_0640 -
           4683970-4684481,4685197-4685343,4685606-4686764,
           4686851-4686907
          Length = 624

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -1

Query: 730 KRPAXPNDGAKDRXRDRTSRQXAGANRFSKRSXQVSPDRLDTQPPGGTIQSPGRE 566
           K+P  P   A++  +D  ++   G   +S R       R  +Q PG ++++ GR+
Sbjct: 545 KQPVRPQR-AREAAKDSVAKAALGNGGWSSRRRPTPSSRRLSQSPGSSVKNRGRD 598


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,634,017
Number of Sequences: 37544
Number of extensions: 437583
Number of successful extensions: 1002
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)