Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_M04
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.36 
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    27   4.4  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    26   7.7  
SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces p...    26   7.7  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 245 VRVHRANTGRSSNELDRQTTELERR 319
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 423 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHN 560
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H+
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 601  CIFFCQSRKSISSLLCILEPNLNVQVCMSLGQLSNCIEIGVLMSKRFIQET 449
            C+  C++   + + +C    NL  QV      L++  EIG  +  RF+  T
Sbjct: 942  CLEVCKTAVKVLNEVCARNENLLAQVVQLQPSLAHLGEIGSPLLLRFLATT 992


>SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 159

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +3

Query: 6   DHSLGIASINQLS*NVDDLYYSCYRFLLTCAIASAAECENATSL 137
           D SL +ASI  LS +   L Y+ Y+ LL  + A  + C+N  +L
Sbjct: 79  DKSL-VASIQGLSVDHRSLVYNHYKHLLEASDAINSFCKNLNTL 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,160,316
Number of Sequences: 5004
Number of extensions: 63741
Number of successful extensions: 179
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)