Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_M03
(847 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 32 0.66
07_01_0373 + 2783596-2784933 31 0.87
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 31 0.87
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 0.87
11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793 29 3.5
02_04_0452 + 23044190-23045227 29 3.5
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.5
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 29 4.7
05_05_0160 + 22829401-22830658,22831671-22831703,22832586-22832728 29 4.7
04_01_0041 - 464695-464850,467485-469029 29 6.2
03_06_0704 + 35641774-35642031,35642122-35642446,35642546-356426... 29 6.2
01_05_0227 - 19512866-19514983 29 6.2
07_01_0544 + 4012457-4012796,4012897-4013069 28 8.1
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 8.1
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 31.9 bits (69), Expect = 0.66
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +2
Query: 533 PPSPAISATS-TRSSNPRFHTPTTPGL--TSISINPLTPYXXEFAPGFKASVVIRGSSAY 703
P SP+ S TS + S ++PT+P TS +P +P +P + S V S
Sbjct: 1761 PTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHA 1820
Query: 704 LTPSSLGMAKXGSPPY 751
+PSS SP Y
Sbjct: 1821 YSPSSPNYYSSTSPTY 1836
>07_01_0373 + 2783596-2784933
Length = 445
Score = 31.5 bits (68), Expect = 0.87
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = -3
Query: 92 EEEKALTKEGMAEAAETXKGTISSMNRS 9
E+++ LTK G + +ET KG++ S++RS
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRS 178
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 31.5 bits (68), Expect = 0.87
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +2
Query: 527 IKPPSPAISATSTR-SSNPR--FHTPTTPGLTSISINPLTP 640
I PPSPA + S+R S +PR F TP T T+ S +P +P
Sbjct: 25 ITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSPPSP 65
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.5 bits (68), Expect = 0.87
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 545 AISATSTRSSNPRFHTPTTP 604
A S+T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793
Length = 576
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +3
Query: 543 LRSRLHQPDHQIPDSIHQPPQA*HPFPSIP*RRTXXSSRRGLKPPLSSEAHQR 701
LR L HQ+ + P A P P T SR G+KP E+ QR
Sbjct: 53 LRDELGDLRHQVGQIVRNPVLAIKPTDLPPLLSTPPGSRAGVKPKEEGESSQR 105
>02_04_0452 + 23044190-23045227
Length = 345
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 480 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPP 602
H +L H+ +A SH SR H P + P S PP
Sbjct: 166 HGCLLLHHAGHGHGHAHSHSHSHSRAHNPSTRPPTSAPPPP 206
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.5
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +1
Query: 283 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 456
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 457 VEGVNVLATPSSSRITIGGLALMHQ 531
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 29.1 bits (62), Expect = 4.7
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +2
Query: 527 IKPPSPAISATSTRSSNPRFHTPTTPGLTSISINPLTPYXXEFAPGFKAS-VVIRGSSAY 703
+ PP+P SA +T H PT P PL P + PGF S + R S Y
Sbjct: 281 LSPPAPMPSALAT-------HVPTPPAPAPPVPTPLAPTPADVPPGFTMSPTITRYSFGY 333
Query: 704 LTPSS 718
SS
Sbjct: 334 DGASS 338
>05_05_0160 + 22829401-22830658,22831671-22831703,22832586-22832728
Length = 477
Score = 29.1 bits (62), Expect = 4.7
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = -2
Query: 738 PXLAMPSD-EGVRYADEPLMTTEALNPGANSX*YGVRGLMEMDVKPGVVGVWNRGFD--D 568
P + SD + VR PL E L G G VKPG + +RG D
Sbjct: 134 PLPGLKSDTKVVRVVCNPLTGGELLPLPEEDPDTGDTGGTWRFVKPGFLTQADRGDGPPD 193
Query: 567 RVDVAEIAGEGGLMHK 520
R VAEI GE +MH+
Sbjct: 194 RYAVAEIRGEDSIMHR 209
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 244 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 420
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 421 TVD 429
+D
Sbjct: 100 PLD 102
>03_06_0704 +
35641774-35642031,35642122-35642446,35642546-35642699,
35643662-35643706,35644121-35644180,35644532-35644694,
35645356-35645717,35645985-35646303
Length = 561
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = +2
Query: 530 KPPSPAISATST----RSSNPRFHTPTTPGLTSISINPLTPYXXEFAPGFKASVVIRGSS 697
+ P P++ T+T + S P+ P P L N P E PG K + SS
Sbjct: 116 RDPKPSLPPTTTQRDPKPSPPQHKAPERPQLVIPGANNRPPPRPEPMPGLKKTAAPSSSS 175
Query: 698 AYLTP 712
A + P
Sbjct: 176 ASVPP 180
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 461 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 369
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>07_01_0544 + 4012457-4012796,4012897-4013069
Length = 170
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +2
Query: 524 CIKPPSPAISATSTRSSNPRFHTPTTPGLTSISINPLTPYXXEFAP 661
C P + S ++ P TPTTP T P TP AP
Sbjct: 102 CKVQTPPVSNCKSGAAAPPAGQTPTTPAGTGSKATPATPVGSGVAP 147
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 8.1
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +1
Query: 235 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 415 PVTVDLCWTTADVTVEGVNVLATPSS 492
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,103,788
Number of Sequences: 37544
Number of extensions: 516560
Number of successful extensions: 1454
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1453
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -