Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_M01
(884 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 256 2e-69
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 252 7e-68
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 44 4e-05
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 31 0.22
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 28 1.5
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 27 3.6
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 26 8.2
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 8.2
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 256 bits (628), Expect = 2e-69
Identities = 121/181 (66%), Positives = 145/181 (80%)
Frame = +3
Query: 87 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVIDLRRTWEKLVLAARAVV 266
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+I+L +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 267 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVSD 446
IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV+D
Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129
Query: 447 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 626
P D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLAREVLRLR
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLR 189
Query: 627 G 629
G
Sbjct: 190 G 190
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 252 bits (616), Expect = 7e-68
Identities = 116/185 (62%), Positives = 147/185 (79%)
Frame = +3
Query: 75 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVIDLRRTWEKLVLAA 254
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H+++L +TWEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 255 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 434
R + IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+
Sbjct: 65 RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124
Query: 435 IVSDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREV 614
+V+DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREV
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREV 184
Query: 615 LRLRG 629
LR+RG
Sbjct: 185 LRVRG 189
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 43.6 bits (98), Expect = 4e-05
Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 27/190 (14%)
Frame = +3
Query: 120 MLAATTHLGAENV--NFQMETYVYKRRADGTHVIDLRRTWEKLVLAARAVVAIENPADVF 293
+L++ HLG N + ++Y +R +G H+I L +T L A V +I +
Sbjct: 53 LLSSGAHLGHSTSIWNPYTQPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGII 111
Query: 294 VISSRPFGQR-AVLKFAAHTGATPIAGRFTPGAFTN--QIQA------------------ 410
+ GQ+ +V+ A I R+ PG TN ++Q
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQT 171
Query: 411 ----AFREPRLLIVSDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHS 578
++ P L+++ +P ++ EA ++P I + +TD+ R V IP N S
Sbjct: 172 DKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRC 231
Query: 579 IGLMWWLLAR 608
L+ LL+R
Sbjct: 232 TDLIAGLLSR 241
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 31.1 bits (67), Expect = 0.22
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Frame = +3
Query: 345 HTGATPIAGRFTPGAFTNQIQAAFR--EPRLLIVSDPAQDHQPI---TEASYVNIPVIAL 509
+ A P G T+ I A F+ +P + ++S D + T A + + L
Sbjct: 29 YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87
Query: 510 CNTDSPLRFVDIAIPCNTKSSHSI 581
C+ +S RF D+A+ NTK +H I
Sbjct: 88 CDRNSK-RFADLAVAANTKFTHFI 110
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = +3
Query: 210 VIDLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 386
V+ +R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -1
Query: 446 VRYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DDEHISGVLDG 267
+R E F + +S + W T + + G+RG ++ EGP D H SGV G
Sbjct: 176 IRAEAEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SADLH-SGVFGG 233
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -3
Query: 294 RTHQRGSRWLRQHEQPEQVFPRYDASRSHGY 202
R H++ + W ++HE+P+ + ++ S S+ Y
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFE-SGSYRY 600
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 439 YRTLHKTINPLLKLHMSTFL*LLCATQTP-H*DLWTLLSHATPSLPTLLV 585
+ +L+K + PLL + F LL + +TP DL+T L P +LL+
Sbjct: 733 FESLYKEVMPLLHALLEAFNSLLISARTPKEKDLFTELCLTIPVRLSLLL 782
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,607,524
Number of Sequences: 5004
Number of extensions: 77272
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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