Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_L24
(858 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 48 1e-05
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 46 3e-05
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 40 0.002
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 38 0.009
AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical ... 34 0.11
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 32 0.60
U23523-2|AAC46559.2| 399|Caenorhabditis elegans Hypothetical pr... 28 9.8
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 47.6 bits (108), Expect = 1e-05
Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 2/177 (1%)
Frame = +3
Query: 120 LLFSLYIND--IPRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRID 293
LLF L+IN+ I +P +++ FADD I+++ +++ + I V+ W + +
Sbjct: 890 LLFILFINNLLIDLAPTINISCFADDVKIFHT--DPTIIQNSIDIIVS----WSKLNELP 943
Query: 294 INPTKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDR 473
+ PTKSA + L +R N S ++ G PI S V+ LG+ D
Sbjct: 944 LAPTKSAL--------------LALGTRNKNQS----YSVDGVPITPSSTVRDLGLITDC 985
Query: 474 GMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVVFA 644
+ F HI V + + R +L + S S + LYKT + P+M Y S V+A
Sbjct: 986 KLKFEHHIVKV---SCLAMLRSKQILKAFSSNSPKFYAHLYKTYVAPIMNYCSEVYA 1039
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 46.0 bits (104), Expect = 3e-05
Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 2/175 (1%)
Frame = +3
Query: 120 LLFSLYINDIPRSPETHLAL--FADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRID 293
LLF +Y+NDI +A FADDT +Y S K LQ A+ + W + ++
Sbjct: 86 LLFGIYVNDISSILPEKVACKQFADDTKLYASTPKTE-SENNLQSALDAVVDWTKGSKLT 144
Query: 294 INPTKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDR 473
+N +K T + + RR + L G PI + + LG +
Sbjct: 145 LNQSK--------------TVHVTVGKRRIDFK----YHLDGYPIERKAITRDLGFLISE 186
Query: 474 GMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVV 638
+ F H + + A F L ++ + +K + + LYKT IRP + Y +VV
Sbjct: 187 KLDFSDHWRKCINLAKFQLANMFNKYSTSNK---KLMILLYKTFIRPRLEYGTVV 238
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 39.9 bits (89), Expect = 0.002
Identities = 29/125 (23%), Positives = 56/125 (44%)
Frame = +3
Query: 123 LFSLYINDIPRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINP 302
LF+ Y+ D+P +T L +ADD +I +K+ ++Q+ + + ++ ++ + I+
Sbjct: 543 LFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISA 602
Query: 303 TKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMT 482
KS +F S P + I PIP ++ K LG+TL+
Sbjct: 603 EKSTVTVF---------SCDPKEHK-----TKPDIYWMDDPIPVINAPKLLGITLNTMTG 648
Query: 483 FRPHI 497
+ H+
Sbjct: 649 TKDHV 653
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 37.9 bits (84), Expect = 0.009
Identities = 24/74 (32%), Positives = 37/74 (50%)
Frame = +3
Query: 423 PIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKT 602
PI + + LG+ D +TF+PHIK + + L R +L S L L+KT
Sbjct: 188 PISPSNIARDLGILTDSKLTFKPHIKKI---VSLALLRCKQLLKSFKSLCPEFYCNLFKT 244
Query: 603 CIRPVMTYASVVFA 644
I P++ Y S V++
Sbjct: 245 YILPLIEYGSAVYS 258
>AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical
protein K09H9.4 protein.
Length = 328
Score = 34.3 bits (75), Expect = 0.11
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = +3
Query: 411 LFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVT 590
L G PI + + LG + + F H K + A F L ++ + +K + +
Sbjct: 136 LDGYPIERKTITRDLGFLISEKLDFSEHWKKSINLAKFQLANIFNQYSTSNKKLM---IL 192
Query: 591 LYKTCIRPVMTYASVV 638
LYKT IRP + Y +VV
Sbjct: 193 LYKTFIRPRLEYGTVV 208
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 31.9 bits (69), Expect = 0.60
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +2
Query: 458 RHPRQRDDIPSPYKNGTRPRRVYSRTTLSNAL*SKQTVPPQ*GNSLQNLHTPRHDVCKRS 637
R PR+R P ++ +R R+ R+ ++ S+ V S +P+ D+ + +
Sbjct: 92 RSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRSESRSPSPKRDLKREA 151
Query: 638 VRSRSPAP 661
RSRSP P
Sbjct: 152 SRSRSPLP 159
>U23523-2|AAC46559.2| 399|Caenorhabditis elegans Hypothetical
protein F53A9.4 protein.
Length = 399
Score = 27.9 bits (59), Expect = 9.8
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 570 SLRNKVTLYKTCIRPVMTYASVVFAHAARHPLEIPSGYSITILQ--DSRRSALVL 728
+LRN+ Y P M+ AA+H E PSG ++ + + D RRS++ L
Sbjct: 86 NLRNRRVSYGKIPVPPMSMTVEDIQEAAKHSREDPSGETVEVRRPNDPRRSSVSL 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,583,660
Number of Sequences: 27780
Number of extensions: 411078
Number of successful extensions: 924
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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