Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_L23
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces...    29   0.69 
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    28   2.1  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    28   2.1  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    27   2.8  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   3.7  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    26   8.5  

>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 17/70 (24%), Positives = 31/70 (44%)
 Frame = +3

Query: 483 IWGEGTPFPTFMDFINAVEKRGVGAMEIVAMDMKLRGMYIARQLSFHGVSFRIEEVPLSD 662
           +W    P P   D +  +   G   + +     K R  Y+  +++ HG++ ++EE+  S 
Sbjct: 29  LWSGSKPIPGVTDTMKLLRSLGKQIIFVSNNSTKSRETYM-NKINEHGIAAKLEEIYPSA 87

Query: 663 AFKETYDKSV 692
               TY K V
Sbjct: 88  YSSATYVKKV 97


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/58 (32%), Positives = 31/58 (53%)
 Frame = -3

Query: 796 SMRLETTDCPTVSYLDPLYQLGASVNRAWPPTHSATLLS*VSLKASESGTSSMRKDTP 623
           S+  ET D PT + ++  Y    ++   W  T S TL S V+   SE+G +++  +TP
Sbjct: 693 SIVTETVDVPTTTSVNYGY---TTITTGW--TGSTTLTSIVTHSGSETGPTTVYIETP 745


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +2

Query: 650 AALRRLQGDLRQERRAV---GW-RPCTVHGGAELIKRIEIXXSGTVCCLXSHTXG 802
           A  R L   + +E R      W RPC V+GGA++  +I     G  C L S T G
Sbjct: 262 APTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQG--CDLLSATPG 314


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 829 KIXXWXRVLPXSMRLETTDCPTVSYLDPLYQLGASVNRAWPPT 701
           KI  W R++P  ++  T +  +  YLD  Y+LG  ++  +  T
Sbjct: 173 KILNWSRLVPFEIQSSTLNSASFIYLDS-YELGKFISHLYNGT 214


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 719 PCMASNPQRDALVVGLLEGVGERHLL 642
           PC+++NP   AL VG L+ V   HLL
Sbjct: 628 PCISTNPNLPAL-VGSLDSVNLHHLL 652


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
 Frame = +3

Query: 78  AERDLRDIGAGKIEVYPLNKFKYARISSAVNGNVKKGVVFATYSS---LIGETASNNTKY 248
           A  ++  +GAG +   PL        S+++   +      A+ +    LIG   +N  + 
Sbjct: 332 AAYEMTSLGAGYLGTAPLASQSILLTSTSLLFQIPFAFAVASSTRVGHLIGSGRANLARL 391

Query: 249 RSRLKQLLQWCGEDFDGVIVF 311
            SR+   L  C   FDG ++F
Sbjct: 392 CSRVAYSLALCISIFDGSLIF 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,468,751
Number of Sequences: 5004
Number of extensions: 42475
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)