Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_L22
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.77 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   7.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -1

Query: 377 PXPXRGXXXXPPXXGPPPPPXGXXKK 300
           P P       PP   PPPPP G  KK
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKK 35



 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +1

Query: 115 PXXXPPPPKXKXGXXPPXXPKXXXXP 192
           P   PPPP    G  PP  P     P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 111 APXXXXPPPKVXXGXXPPPTPXXXXTPXPP 200
           AP    PP  +  G  PPP P       PP
Sbjct: 747 APIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = +3

Query: 93  KNPNXXAPXXXXPPPKVXXGXXPPPTPXXXXTPXPP 200
           K+P    P    P P       PPP P     P PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +1

Query: 112  PPXXXPPPPKXKXGXXPPXXPKXXXXPXP 198
            PP   PP PK   G  PP  P     P P
Sbjct: 1193 PPSEAPPVPKPSVG-VPPVPPPSTAPPVP 1220



 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +1

Query: 106  PXPPXXXPPPPKXKXGXXPPXXPKXXXXPXPR 201
            P P    PP PK   G  PP  P     P P+
Sbjct: 1172 PAPSSGIPPVPKPAAG-VPPVPPPSEAPPVPK 1202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,595,000
Number of Sequences: 5004
Number of extensions: 18664
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)