Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_L19
         (839 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0854 + 25400855-25403741,25406174-25407708                       29   4.6  
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764           29   6.1  
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    29   6.1  
03_04_0006 + 16257288-16259522                                         28   8.1  

>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 191 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLTVVS 66
           AKR+PT  T    P  AR  +++   +F   +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515


>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
          Length = 640

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 313 TTLHAWNETPCARRYY 266
           TT  AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575


>03_05_1065 +
           30061588-30061883,30061995-30062056,30062196-30062276,
           30062391-30062464,30062547-30062629,30063044-30063147,
           30063526-30063665,30063736-30063783,30063939-30063991,
           30064178-30064262,30064346-30064412,30064496-30064606,
           30065262-30065283,30066244-30071110,30071186-30071374,
           30071463-30071577,30072329-30073388,30074247-30074694,
           30074966-30075019,30075105-30076898,30076989-30077949,
           30078271-30078384,30078459-30078613,30078934-30079026,
           30079341-30079613,30093423-30093975,30094465-30094540,
           30094619-30094718
          Length = 4025

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -3

Query: 444 AELALGHLRYFLTDVPPQSNSPPGRVLEPDHAGV*TATSVSATSPLCTLGTKHRAPADII 265
           A  + GH R+ + D   +  S  G   + D +      +VSA + LC +   H AP  + 
Sbjct: 379 ATTSSGHRRFGMEDEIEEELSLAGIFNKGDRSYAVRRAAVSAYAALCAVLCAHEAPGGLP 438

Query: 264 DR 259
           DR
Sbjct: 439 DR 440


>03_04_0006 + 16257288-16259522
          Length = 744

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = -1

Query: 191 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLTVVSLDSR*GQWE 39
           A+RSP    Y T L +   ARL    T    PA SP    + V S   + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,832,430
Number of Sequences: 37544
Number of extensions: 385297
Number of successful extensions: 1228
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)