Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_L18
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    33   0.055
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.13 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.22 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.52 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.4  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 33.1 bits (72), Expect = 0.055
 Identities = 25/79 (31%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
 Frame = -2

Query: 792 GXXVXGXXGXXXXXXXGXXXCGGVXXXXKXXXXXGXXGGLGXXXFXXXEGXXGGFXXPPX 613
           G    G  G       G    GG           G  GG G       EG  GGF   P 
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGP-GGFEGGPGGFGGGPG 245

Query: 612 XXGGG-GXFXXXXXGGGGG 559
             GGG G F     G GGG
Sbjct: 246 GFGGGLGGFGGGPGGFGGG 264


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 17/50 (34%), Positives = 17/50 (34%), Gaps = 6/50 (12%)
 Frame = +2

Query: 560 PPPP------PXXXXXXXPPPPXXXGGXXNPPXSPSXXXKXXXPXPPXXP 691
           PPPP      P       PPP    GG   PP  P        P PP  P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 30.3 bits (65), Expect = 0.39
 Identities = 16/49 (32%), Positives = 18/49 (36%)
 Frame = +2

Query: 545 GGXGXPPPPPXXXXXXXPPPPXXXGGXXNPPXSPSXXXKXXXPXPPXXP 691
           GG   PPPPP       PPPP        PP   +   +   P P   P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPP------PPAVSAGGSRYYAPAPQAEP 801



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/57 (29%), Positives = 17/57 (29%)
 Frame = +1

Query: 475 PPPTXXXXXXXXXXIKXXGXXPXGGGXXXXPPPPXXXXKXXXPPXXXGGXGKPPPXP 645
           PPP           I      P  GG    PPPP        PP        PPP P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP--------PPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 539 PXGGXGXPPPPPXXXXXXXPPPPXXXG 619
           P G    PPPPP       PPPP   G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 23/87 (26%), Positives = 24/87 (27%), Gaps = 2/87 (2%)
 Frame = +2

Query: 539 PXGGXGXPPPPPXXXXXXX--PPPPXXXGGXXNPPXSPSXXXKXXXPXPPXXPXXXXXXF 712
           P G    PPPPP         PPP        NPP  P        P  P          
Sbjct: 355 PQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALP----PLGNAS 410

Query: 713 XXXTPPQXXKPXXXXXXXPXXPXTXXP 793
              TPP    P       P  P +  P
Sbjct: 411 RTSTPPVPTPPSLPPSAPPSLPPSAPP 437



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/48 (33%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
 Frame = +2

Query: 554 GXPPPPPXXXXXXXPPPP--XXXGGXXNPPXSPSXXXKXXXPXPPXXP 691
           G  P PP       PPPP      G   PP S S         PP  P
Sbjct: 349 GSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/45 (31%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
 Frame = +2

Query: 560 PPPPPXXXXXXXPPPPXXXGGXXN----PPXSPSXXXKXXXPXPP 682
           PPPPP         PP   G   +    PP  P        P PP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 560  PPPPPXXXXXXXPPPPXXXGGXXNPPXSP 646
            PPPPP       PPPP        PP +P
Sbjct: 1707 PPPPPM----SVPPPPSAPPMPAGPPSAP 1731


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.146    0.500 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,626,825
Number of Sequences: 5004
Number of extensions: 22835
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)