Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_L17
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.51 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   1.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.6  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    25   8.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -2

Query: 604 PPPPPPPXXXXGPPP 560
           PPPPPP     GPPP
Sbjct: 763 PPPPPPGVAGAGPPP 777


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.6 bits (51), Expect(2) = 1.6
 Identities = 10/29 (34%), Positives = 10/29 (34%)
 Frame = -1

Query: 671 PPPXXXXXXXKXXXXXXXXXXXPPPPPPP 585
           PPP                   PPPPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPP 195



 Score = 21.4 bits (43), Expect(2) = 1.6
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -1

Query: 602 PPPPPPXXXXXPP 564
           P PPPP     PP
Sbjct: 236 PAPPPPPPPTLPP 248


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 604 PPPPPPPXXXXGPPP 560
           PPPPPP     G PP
Sbjct: 312 PPPPPPSRRNRGKPP 326



 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = -3

Query: 684 PXXXPPPXXXXXXXKXXXXXXXXXXXPPPPPPP 586
           P   PPP                   PPPPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +1

Query: 529 GGGGXKKKKXXGGGXXXXXGGGGGGG 606
           GG G   +   GGG     GGG  GG
Sbjct: 152 GGFGGNSRGGFGGGSRGGFGGGSRGG 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.149    0.476 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,291,469
Number of Sequences: 5004
Number of extensions: 16555
Number of successful extensions: 240
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)